BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51670.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916784 jgi|Araly1|916784|Al_scaffold_0008_1535 2233 0.0
> Ahg916784 jgi|Araly1|916784|Al_scaffold_0008_1535
Length=1425
Score = 2233 bits (1209), Expect = 0.0
Identities = 1357/1429 (95%), Gaps = 8/1429 (1%)
Strand=Plus/Plus
Query 24 ATGGCTCTCGAAACTTTTCTAATAAAACTCAAAAACGCTATTTCCTCCAAACCAACTTCT 83
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTTGAAACTTTCCTAATAAAACTCAAAAACGCTATTTCCTCCAAACCAACTTCT 60
Query 84 CGTCGACCACACCGATCATCTCCTCCGAT-ATCAACCACCACTTCCTCCGTCGGAGTATT 142
|||||||| | ||||||| |||||||||| | |||||||||||||||||||||| || ||
Sbjct 61 CGTCGACCTCTCCGATCACCTCCTCCGATCA-CAACCACCACTTCCTCCGTCGGCGTTTT 119
Query 143 ATCGTTCGAAGTAGCACGTGTCATGACCAAACTCCTACATCTCACTCACTCTCTCACCGA 202
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 120 ATCGTTCGAAGTGGCACGTGTCATGACCAAACTCCTCCATCTCACTCACTCTCTTACCGA 179
Query 203 TTCCAATCTCCTCACTCCT-CGAGACCACTCTCTTTCCTTAGAAGGTCTAACCAAAATCG 261
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCCAATCTCCTCACT-CTCCGAGACCACTCTCTTTCCTTAGAAGGTCTAACCAAAATCG 238
Query 262 TCAACGGCGACGAAACATTCCACCTCAGCCTCGTTTGTGCTGAGCTCGCAGATAGTCTCG 321
| |||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 239 TTAACGGCGACGAAACTTTCCACCTCAGCCTTGTATGTGCTGAGCTCGCCGATAGCCTCG 298
Query 322 CCCACGCAGCTAACTCTGTTTCAAGACTGAGCAACCGCTGCACCACGGCCAGCCTCCGTT 381
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 CCCACGCAGCTAACTCTGTTTCAAGACTGAGCCACCGCTGCACCACGGCCAGCCTCCGTT 358
Query 382 CTTTCCACCGCTTATTCCATGAATTTGCCGACATGGGTCGTGACCCTCATGGATGGGTCA 441
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 CTTTCCACCGCTTATTCCATGAATTTGCCGACATGGGTCGTGACCCTCATGGCTGGGTCA 418
Query 442 TGAACTGTAAAGACACAGAAGCTAAAAACAAGAAAATCGAAAGATACGTGAGCGTGACGA 501
||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 419 TGAACTGCAAAGACGCAGAAGCTAAGAACAAGAAAATCGAAAGATACGTGAGTGTGACGA 478
Query 502 CAGCTTTGTATAGAGAGATGGAAGAAATGGCGATATTAGAGAACTCTCT-ACGAAAACAA 560
||||||||||||||||||||||||||||| |||| |||||||||||| | | ||||||||
Sbjct 479 CAGCTTTGTATAGAGAGATGGAAGAAATGACGATGTTAGAGAACTCTTTGA-GAAAACAA 537
Query 561 AGTTTACAGATTGGGATCGAATTCGAAGAAGAAGAAGACTACGAGAACAAGAAAGATGTT 620
|||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 538 AGTTCACAGATTGGGATCGAATTCGAAGAAGAAGACGACTTCGAGAACAAGAAAGATGTA 597
Query 621 ATGAAAGTGATAGATCTACAGAACAAGATTGAGAGACAGAAACAACATGTCAAGTATCTA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGAAAGTGATAGATCTACAGAACAAGATTGAGAGACAGAAACAACATGTCAAGTATCTA 657
Query 681 AAAGACAGATCTCTCTGGAACAAAAGCTTCGACACTGTCGTGTTGATTCTCGCCAGATCG 740
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAGACAGATCTCTATGGAACAAAAGCTTCGACACTGTCGTGTTGATTCTCGCCAGATCG 717
Query 741 GTATTCACAGCACTCGCTAGACTCAAATCCGTCTTCTCCTCCGCCGCAGCCACTGGGTAC 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 GTATTCACAGCACTCGCTAGACTCAAATCCGTCTTCTCCTCCGCCGCAGCCACTGGCTAC 777
Query 801 ATGGTTC-CGACCGTCGTGtcttctctccctcgttctctctcttcttcttcttcctctAT 859
|||| | | ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 778 ATGGGCCAC-ACCGTCGTGTCTTCTCTCCCTCGCTCGCTCTCTTCTTCTTCTTCCTCTAT 836
Query 860 GAATCTTGTTCACCCTAGCCCAAACGACGAAGAGAGAGACAAGACGACGACGTCTTCTGC 919
|||||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||
Sbjct 837 GAATCTTGTTCACCCTAGCCCAAACGACGAGGAGAGAGACAAAACGGCGTCGTCATCTGC 896
Query 920 GTTTCTTGAAGAAAGCTCAAGACTATTGAAACCACCGGAGACAACTCTCGGCGGAGCTGG 979
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 897 GTTTCTTGAAGAAAGCTCAAGACTTTTGAAACCTCCGGAGACAACTCTCGGCGGAGCTGG 956
Query 980 CGTGGCGCTTCACTACGCGAATCTGATAGTAGTAATGGAGAAGATGATAAAGCAACCTCA 1039
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 TGTAGCGCTTCACTACGCGAATCTGATAGTAGTAATGGAGAAAATGATAAAGCAACCTCA 1016
Query 1040 GCTTGTAGGTCTTGACGCGAGAGACGATCTGTATTCAATGTTACCGGCAAGTGTGAGATC 1099
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 GCTTGTAGGTCTTGACGCGAGAGACGATCTGTATTCAATGTTACCGGCGAGTGTGAGATC 1076
Query 1100 GTCACTTAGGTCAAGGCTAAAAGGAGTTGGTTTCACGGCGACGGACGGTGGTTTAGCGAC 1159
||| || |||||||| ||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 1077 GTCTCTCAGGTCAAGACTAAAAGGAGTTGGTTTTTCGGCGACAGACGGTGGCTTAGCGAC 1136
Query 1160 GGAGTGGAAGGCGGCTTTAGGTCGGATCTTACGGTGGTTGTTACCATTGGCGCAGAATAT 1219
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1137 AGAGTGGAAGGCGGCGTTAGGTCGGATCTTACGGTGGTTGTTACCATTGGCTCAAAATAT 1196
Query 1220 GATTAGGTGGCAGAGTGAGAGAAGCTTTGAGCAGCAACACATGGCGACGGCAACGAATAG 1279
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1197 GATTAGGTGGCAGAGTGAGAGAAGCTTCGAGCAGCAACACATGGCGACGGCAGCGAATAG 1256
Query 1280 TCAGAACAGAGTGATGTTAGTTCAAACACTAGTGTTTGCAGATAAAGTTAAGACAGAAGC 1339
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 TCAGAACAGAGTGATGTTAGTTCAAACACTTGTGTTTGCAGATAAAGTTAAGACAGAAGC 1316
Query 1340 AGCCATAACAGAGCTTCTTGTTGGGTTGAATTACATCTGGAGATTCGAAAGAGAGATGAC 1399
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 AGCCATAACAGAGCTTCTTGTTGGATTGAATTACATCTGGAGATTCGAAAGAGAGATGAC 1376
Query 1400 TGCGAAAGCTCTGTTTAATCTACAGTGTCCTCCTACTAATTACAGCTAA 1448
|||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1377 TGCGAAAGCTCTCTTTAATCTACAGTCTCCTCCTACTAATTACAGCTAA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5