BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51680.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949711 jgi|Araly1|949711|scaffold_801598.1 1711 0.0
> Ahg949711 jgi|Araly1|949711|scaffold_801598.1
Length=1073
Score = 1711 bits (926), Expect = 0.0
Identities = 1024/1073 (95%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 251 CAACGTAAGAGATACGAACAAATGTCTGATATGGAACCAAAAGAAACAAAACCACCTCGA 310
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |
Sbjct 1 CAACGTAAGAGATACGAATAAATGTCTGAAATGGAACCTAAAGAAACAAAACCACCTCAA 60
Query 311 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAGCGGCCTGGCTTCCCC 370
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AAACAATTGAGACAGCCTCCTTCTGTTCCTTTCATTTGGGAAGAACGGCCTGGCTTCCCC 120
Query 371 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCCGCTTCCGCCA 430
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 AAGAAGAATTGGCAACCTTCACTAGCCACTTTTGTGCCTTCTCCTCCTCAGCTTCCGCCA 180
Query 431 CCTATCCCAGTCCCGGTTAAGCTGGTAACATCAGTTCCTTTCCGTTGGGAAGAAACGCCT 490
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 CCTGTCCCAGTCCCGGTTAAGCTGGTCACATCGGTTCCTTTCCGTTGGGAAGAAACGCCT 240
Query 491 GGAAAACCACTCCCTGCTTCCTCAAATGACCCACCTCAGCTTCCACATCCACCATTGGAA 550
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 241 GGAAAACCACTCCCTCCATCCTCAAATGACCCACCACAGCTTCCACATCCACCATCGGAA 300
Query 551 ACCGCTACGCCGACTCCATTACCGCCTCCAGTTCCTGTTCCGGTTAAGCAGGTTACTTCG 610
||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 301 ACCGCTACGACGACTCCATTACCGCCTCCGGTTCCAGTTCCCGTTAAGCAGGTTACTTCA 360
Query 611 GTTCCTTTCGATTGGGAAGAAACTCCAGGACAACCATACCCATGCTTTGTTGATACCAGT 670
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 361 GTTCCGTTCGATTGGGAAGAAACTCCTGGACAACCATACCCATGCTTTGTTGATACCAAT 420
Query 671 CCACCTGAGCTGTTGGATCAACCGCTGCCACCGCCTCCCATGTACGGTGATGTTGAAACC 730
|||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 421 CCACCTGAGCCGTTGGATCAGCCGCTGCCACCTCCTCCCATGTACGGTGAGGTTGAAACC 480
Query 731 AGCAGCGATATTTTTGATGATGCAAGCAGTGACTCCTTCAGCTCTGTGCCGTCTCTATTA 790
|||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 481 AGCAGCGATATTTTTGATGACGCAAGCAGTGATTCCTTCAGCTCTGTACCATCTCTATTA 540
Query 791 GCAACAAACCGCTCGGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 850
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAACAAACCGCTCAGTTTCGATATCCGGTGCTGTTGCGGTGGATGAATTTGATGACAAC 600
Query 851 CTGAATACAGTGACTAGCTCGATGCCAACATCGCCAGCTTATGAATCTGATGACAGTACT 910
||||||| |||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 601 CTGAATAGAGTGACAAGTTCAATGCCAACATCACCAGCTTATGAATCTGATGACAGTACG 660
Query 911 AGCAGTTACATGACGGGAGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 970
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCAGTTACATGACGGGCGCTTCCAGTCTTGTGGGAGCTTCGTTCTTGGAAAAGCTCTTT 720
Query 971 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGTTTCTGAGGACGTTCAGGTTTCT 1030
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 721 CCACGTCTTCTTCCATCAGAAAAGGTCAAAGCTGCTGATTCTGAAGACGTTCAGGTTTCT 780
Query 1031 ACTCATCCGTTGCATGAAGAAGTGAAGCTTACTACAGAAACTGACAACATGAGTATTGGC 1090
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 781 ACTCATCCGTTGCATGAAGAAGTAAAGCTTACTACAGAATCTGACAACATGAGTATTGGA 840
Query 1091 TTTCCTGTGAGGACGCCACAGACACTCGGGGAGCTGATAATGATGAGCAGAAGGAGAAGT 1150
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 TTTCCTGTGAGGACGCCTCAGACACTCGGGGAGCTGATAATGATGAGCCGAAGGAGAAGT 900
Query 1151 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACACGGAATTTACAAAGAAT 1210
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 TATATGAGAAGAGCTGTTGAAATGAGAAAGCAGAATCCTTACAAGGAATTTACAAAGAAT 960
Query 1211 GGAGCTGATAGCTGCTGCCTCTTTGTGCCGGGCATCAAAATGATAGAAGGCCTTGAGTGG 1270
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 961 GGAGCTGATAACTGCTGCCTTTTTGTGCCGGGAATCAAAATGATAGAAGGCCTTGAGTGG 1020
Query 1271 AAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACACTTATAAAGAT 1323
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 AAAAAATACCAACCGAGGTTGAAGCTCATTTAGAAGAAAACACTTACAAAGAT 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5