BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51700.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331546 jgi|Araly1|331546|fgenesh1_pm.C_scaffold_8000889 1000 0.0
> Ahg331546 jgi|Araly1|331546|fgenesh1_pm.C_scaffold_8000889
Length=678
Score = 1000 bits (541), Expect = 0.0
Identities = 637/683 (93%), Gaps = 7/683 (1%)
Strand=Plus/Plus
Query 63 ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATG 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGTAGGATCTGAAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATG 60
Query 123 TTCACCGATGAC-GACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTT 181
|||||||||| | || ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 61 TTCACCGATG-CTGATAATCCTCAAGGTTCTTGTCAATTCCATGCTTCC---CCATTTTT 116
Query 182 TCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTT 176
Query 242 CTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAA 301
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 177 CTTGGAAATTCCAGGATGTAAAACTGGTAAACACACAACTGAGAAACCAGTCCTGGCCAA 236
Query 302 ATCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAAC 361
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACCGGCTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAAC 296
Query 362 AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACC 421
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 AAAAGGCTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGGCTCCCAACC 356
Query 422 CAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAGCAGAAGAAGAAAAAATTGA 481
|||||| |||| || ||||||||| ||||| |||| ||||||||||||||| || |||||
Sbjct 357 CAAAGAGCAGACCAGGCAGACCCTAAACACCCCGGTACAAGCAGAAGAAGAGAAGATTGA 416
Query 482 ACCCTTAGCGCCTCCAGT-ACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCA 540
| ||||||| |||||| | | |||||| ||| |||||||| |||||||||||||||||||
Sbjct 417 ATCCTTAGCACCTCCAATTA-AAAAGGTTGTTATAGACATCAATCAACCGCAAGTCTGCA 475
Query 541 AAAACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCC 600
| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 476 ACAACAAAGGATGTGGAAAAACATTCAAAGAGAGAGACAATCACGAGACTGCTTGTAGCT 535
Query 601 ATCATCCAGGTCCTGCGGTCTTCCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTC 660
|||||||||||||| ||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct 536 ATCATCCAGGTCCTCCGGTCTTCCACGACAGACTGAAAGGATGGAAATGCTGTGATGTTC 595
Query 661 ACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCACTAAAGGATGGCATAGCA 720
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 ACGTGAATGAGTTCGACGAGTTCATGGAAATACCTCCTTGCACTAAAGGTTGGCATAGCA 655
Query 721 GCAGCCCTGATCCGGCGGTCTGA 743
||||||| ||| ||||||||||
Sbjct 656 GCAGCCCCAATCAGGCGGTCTGA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5