BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51710.1
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495238 jgi|Araly1|495238|fgenesh2_kg.8__1054__AT5G51710.1 3522 0.0
> Ahg495238 jgi|Araly1|495238|fgenesh2_kg.8__1054__AT5G51710.1
Length=2109
Score = 3522 bits (1907), Expect = 0.0
Identities = 2050/2116 (97%), Gaps = 22/2116 (1%)
Strand=Plus/Plus
Query 1 ATTGATTCAATTTCAAAATTTTGGATCTAATAAAACCAAAACTCTCA--TTaaaaaaaaa 58
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1 ATTGATTCAATTTCAAAATTTTGGATC---TAAAACCAAAACTCTCATCTTAAAAAAAAA 57
Query 59 aataaaaaaaTCAAATCTGATTTCTGAAACGTTTTTG-ATTCGCGACGATTCCCAAATTC 117
|| | |||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct 58 AA-CACAAAATC-AATCTGAATTCTGAAACATTTTTGAATTCGCGACGATTCCCAAATTC 115
Query 118 CTGGGAAAATATCTCTG-ATCGAT-G-G-CGAGATTCGCAGTGATTGGATTAACGTTCCT 173
||||||||||| |||| ||| || | | |||||||||||||||||||||| ||||||||
Sbjct 116 CTGGGAAAATA--TCTGAATCCATGGCGACGAGATTCGCAGTGATTGGATTTACGTTCCT 173
Query 174 CCTTTTACTTGGTACGTCCTTATCAGCGAGATCTGATGAAGAAACACGCGAGCGATTTTA 233
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 174 CCTTTTACTTGGTACATCCTTATCAGCGAGATCTGATGAAGAAACGCGCGAGCGATTTTA 233
Query 234 CGGCAACGTCGTGAACTCGACGGCTCCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CGGCAACGTCGTGAACTCGACGGCACCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293
Query 294 CGATCGAGTTCTGGAGAAAGAATTTTCCGAAAACGATTCGCCTGAAGGATCTGATGGAGC 353
||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 294 CGATCGAGTTCTGGAGAAAGAGTTTTCCGATAACGATTCTCCCGAAGGATCTGATGGAGC 353
Query 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAAATAGAGACTGTTGCTAAAGTAAC 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAGATAGAGACTGTTGCTAAAGTAAC 413
Query 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAATAATGGTACGAGACCGTTTCAACT 473
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAACAATGGTACGAGACCGTTTCAACT 473
Query 474 TCAAGATGTGTTTTCCCTGGAGAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCAAGATGTGTTTTCCCTGGAAAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533
Query 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATACTTCAAGTAGATTT 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATCCTTCAAGTAGATTT 593
Query 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCAATTGGTGGCATCGTCTT 653
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCGATTGGTGGCATCGTCTT 653
Query 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCAATCATTGGGCC 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCGATCATTGGGCC 713
Query 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773
Query 774 TGTTTTCCTTCTGTTTGCTTTGGGTTTGGAATTCTCAATGACTAAGCTGAAAGTCGTTGG 833
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 774 TGTTTTTCTTCTGTTTGCTTTGGGCTTGGAATTCTCAATGACGAAGCTGAAAGTCGTTGG 833
Query 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893
Query 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953
Query 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013
Query 1014 TCATGGTCAAGTTACTATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCATGGTCAAGTTACGATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073
Query 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133
Query 1134 AAAGCTGCTACTGATATTGTCCATATATCTCACTGTGGCATCTCTATTAACGTGGTCATT 1193
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 AAAGCTGCTACTGATATTGTCCATATATCTCATTGTGGCATCTCTATTAACGTGGTCATT 1193
Query 1194 TGTACCTCGTTTTCTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGTACCCCGTTTTTTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253
Query 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313
Query 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373
Query 1374 TACACTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TACATTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433
Query 1434 CGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAGCGTCGGT 1493
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 CGGGATGCTCATTAATGTGCACTTTCTATGGAACCACGTGGATATCCTTCTGGCGTCGGT 1493
Query 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553
Query 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613
Query 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGGGAAAATGTATCTACTCCT 1673
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGTGAAAATGTATCTACTCCT 1673
Query 1674 TTTGGGCACAACTGCTCTAAGTCTCGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 TTTGGGCACAACAGCTCTAAGTCTTGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733
Query 1734 TGCAATGAACCTCGGTGTCCTGCTTCGATGGTTCCCTTCTGAGAACAGTTCTCCGAACGA 1793
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1734 TGCAATGAACCTCGGTGTCCTCCTTCGATGGTTCCCTTCTGAGAACAGTGCTCCGAACGA 1793
Query 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCTT 1853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCAT 1853
Query 1854 TTGTACATTGACTGAAGATTTAAGAAG-AAAAAA-CAGATTTTGATCCGATATACTCAAC 1911
|||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 1854 TTGTGCATTGACTGAAGATTTAAGAAGGAAAAAAACAGATTTTGATCCGATAAACTCAAC 1913
Query 1912 TAGGAGGCAGAAAAAA-----CATTTGAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1966
|||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1914 TAGGTGGCAAAAAAAAAAAAACATTTAAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1973
Query 1967 TGTATTTTCTTAACTCTTTATTTTTTGTAATATCGTATATATTTAGTATTCACTACCTTC 2026
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1974 TGTATTTTCTTAACTCTTTATTTTTTGTAATATGGTATATATTTAGTATTCACTACCTTC 2033
Query 2027 TTGTGTAGTTCAAGCG-CTTATAGCTTGTTTTACTTGGTGTAAACGTTGTAACGATATTA 2085
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 2034 TTGTGTAGTTCAAGTGACTTATAGCTTGTTTTACTTGGTGTAAAAGTTGTAATGATATTA 2093
Query 2086 GCCTTATATGCTGTTG 2101
||||||||||||||||
Sbjct 2094 GCCTTATATGCTGTTG 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80256146215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5