BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51730.1

Length=1246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916790 jgi|Araly1|916790|Al_scaffold_0008_1541                    712    0.0  


> Ahg916790 jgi|Araly1|916790|Al_scaffold_0008_1541
Length=525

 Score =  712 bits (385),  Expect = 0.0
 Identities = 450/481 (94%), Gaps = 5/481 (1%)
 Strand=Plus/Plus

Query  382  GCTAAAACAGATACCAATACTTGTAAAAAAGAGAGCAGCCGTAATGTTTCTAGCAAGGAA  441
            |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    GCTAAAGCAGATACCAATACTTGTAAAAAAGAGAGCAGCAGTAATGTTTCTAGCAAGGAA  60

Query  442  TCTGATGTAGTGAAGAAAGAAACCCTAGAACGAACGTTACCTACTTACTCTT-T--TAAG  498
            ||||||||| || |||||||||||||| ||||||| |||| | ||| ||||| |  || |
Sbjct  61   TCTGATGTACTGGAGAAAGAAACCCTAAAACGAACATTACGTCCTTGCTCTTCTGATAGG  120

Query  499  AATCTTACAAAGACTGCTGAGGTAGGCGAGAGAGCCTTATTCATTCCAAAACAAGGGGGG  558
              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  121  CCTCTTACAAAGACTGCTGAGGTAGGCGAGAGAGTCTTATTCATTCCAAAACAAGGGGGG  180

Query  559  AGATATGATTGTGGCACGATTTTCGTAAAGGGATATGATTCTTCGCTTGGTGAGAATGAT  618
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGATATGATGGTGGCACGATTTTCGTAAAGGGATATGATTCTTCGCTTGGTGAGAATGAT  240

Query  619  CTCGCGAGAGCATTGCTTGAACATTTCAGTCCATGTGGAATGATCTCAAGAATTTATTTT  678
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  241  ATCGCGAGAGCATTGCTTGAACATTTCAGTCCATGTGGAATGATCTCAAAAATTTATTTT  300

Query  679  CAAACAAATGACGCCGGTGAAGCTGTCTTAAAACATGTGTTCATTGTAATGTTACAAGGC  738
            ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||
Sbjct  301  CAAACAAATGACGCCGGTGCAGCTGTCTTAAAACATGTTTTCATTGAAATGTTACACGGC  360

Query  739  ACAGAGGACGCTTTAAAACTTAATGGTAGTGACATGGGAGGATGCAATCTTGAAGTTCAT  798
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  361  ACAGAGGACGCTTTAAAACTTAATGGAAGTGACATGGGAGGATGCAATCTTGAAGTTCAT  420

Query  799  GACGCTACA-GAGAGAGACGAATTCTATGTCAATTATGAAGTGAGTGGTGGTCCGTTTAT  857
            |||||| || ||||||||||||| |||| |||||  |||||||||||||||||| |||||
Sbjct  421  GACGCT-CAAGAGAGAGACGAATACTATATCAATCGTGAAGTGAGTGGTGGTCCTTTTAT  479

Query  858  C  858
            |
Sbjct  480  C  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46548081657


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5