BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51740.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495240 jgi|Araly1|495240|fgenesh2_kg.8__1056__AT5G51740.1 2063 0.0
> Ahg495240 jgi|Araly1|495240|fgenesh2_kg.8__1056__AT5G51740.1
Length=1488
Score = 2063 bits (1117), Expect = 0.0
Identities = 1389/1516 (92%), Gaps = 35/1516 (2%)
Strand=Plus/Plus
Query 56 ATTTCTCCTTCAAGCTCCGTTCCCAGCAATGTCATGGTACAGAAGAACAAAACTCGTATT 115
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATTTCTCCTTCAAGCTCCGTTCCCAGCAATGTCATGGTACCGAAGAACAAAACTCGTATT 60
Query 116 CGATTCCCTGCGACGCAACATAAACCCGAAGATTCTACCTCGATCTCATGTTACTTCGAG 175
||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||
Sbjct 61 CGATTCCCTGCGACGTAACATAAACCCGAAGATTCTACCTCGGTCTCATCTTCCTTCGAG 120
Query 176 AATCAACAATCCAATTGGGTCTTCTAATCCCTCAGCTAAGTTCTCTTCAATCTCTTCGCG 235
||| ||||||||||||| ||| | || | ||| || ||||| ||||||||
Sbjct 121 AAT---CAATCCAATTGGG---TCT--T--CT--G---GGTTTTCCTCAATTTCTTCGCG 165
Query 236 AGAAGTAGGATTAAGATCATGGACATCTCTCGGCCGAAACACGAACAGAATCGCGTATAA 295
||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 166 TCAAGTAGGGTTACGATCATGGACATCTCTCGGCCAAAACACCAACAGAATCGCGTATAA 225
Query 296 TCCGTTTCTGAGTCAACCCAAGAGATATTACTACGTTGATCGATACCAAGTTCGTCATTT 355
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 226 TCCGTTTCTGAGTGTACCCAAGAGAAATTACTACGTTGATCGATACCAAGTTCGTCACTT 285
Query 356 CAAGCCACGAGGACCAGGACGGTGGTTTCAAAACCCTAGAACTGTGTTTACGGTGGTGCT 415
||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |
Sbjct 286 CAAGCCACGAGGACCAGGAAGATGGTTTCAAAACCCTAGAACAGTGTTTACGGTGGTGAT 345
Query 416 CGTTGGTTCCGTTGGTCTGATCACTTTGAT-TGTTGGGAATACAGAAACGATTCCGTACA 474
|||||||| |||| | |||||||||| || |||||||||| ||||||| |||||||||
Sbjct 346 TGTTGGTTCTGTTGCTGTGATCACTTT-ATATGTTGGGAATTTAGAAACGGTTCCGTACA 404
Query 475 CAAAGAGAACACATTTCATTCTCTTATCGAAACCTATGGAGAAGCTTCTTGGTGAAACTC 534
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 405 CAAAGAGAACACATTTCATTCTCTTATCAAAACCTATGGAGAAACTTCTTGGGGAAACTC 464
Query 535 AATTTGAGCAGATTAAGAAAACTTACCAAGGGAAAATTCTTCCTGCGACTCATCCTGAGA 594
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 465 AATTTGAGCAGATTAAGAAAACTTACAAAGGGAAAATTCTTCCTGCGATTCATCCTGAGA 524
Query 595 GTATCAGGGTTAGATTGATAGCTAAAGAGGTTATTGATGCGTTACAGAGAGGTTTGAGTA 654
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 GTATTAGGGTTAGATTGATAGCTAAAGAGGTTATTGATGCGTTGCAGAGAGGTTTGAGTA 584
Query 655 ATGAGCGTGTATGGAGTGATTTGGGGTATGCTTCTACTGAGAGTAGTTTGGGAGGTGGTA 714
|||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| |
Sbjct 585 ATGAGCGTGTGTGGAGTGATTTAGGGTATGCTTCTACAGAGAGTAGTTTAGGAGGT-G-- 641
Query 715 GTGATAAAGGAGTTAAGGAAATGGAAATGGCTATGAGTGGTGAAGATACTATGACTGATA 774
||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 642 GTGATAAGGGAGTTAAGGAGATTGAAATGGCTATGAGTGGCGAAGATACGATGACTGATA 701
Query 775 TGAAATGGTCTAAAGAAGATCAGGTTCTTGATGATCAATGGATTCAA-AAGAGTAGGAAG 833
||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 702 TGAAATGGTCTAAAGCAGATCAGGTTCTTGATGATGAATGGATTCAACAA-AGTAGGAAG 760
Query 834 AAAGATTCAAAGGCTCATGCAGCGACTAGTCATCTTGAAGGTATTAGTTGGGAGGTTCTT 893
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 761 AAAGATTCAAAGGCGCATGCAGCGAGTAGTCATCTTGAAGGGATTAGTTGGGAGGTTCTT 820
Query 894 GTGGTTAATGAGCCTATTGTTAACGCGTTTTGTTTGCCTGCTGGGAAGATTGTGGTGTTC 953
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 821 GTGGTTAATGAGCCTATTGTTAACGCGTTTTGCTTGCCTGCTGGGAAGATTGTGGTGTTC 880
Query 954 ACTGGGCTGCTTAATCA-TTTCAAGTCAGATGCTGAAGTTGCCACTGTGATTGGGCATGA 1012
|||||||||||| || | ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 881 ACTGGGCTGCTTGAT-ATTTTCAAGTCGGATGCTGAAGTTGCCACTGTGATCGGGCATGA 939
Query 1013 GGTTGGTCATGCGGTGGCCCGACATGTAGCTGAGGGAATAACTAAGAACTTGTGGTTTGC 1072
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 940 GGTTGGTCATGCGGTGGCCCGACATGTAGCTGAGGGAATAACAAAGAACTTATGGTTTGC 999
Query 1073 TA-TCCTTCAACTGGTCCTATATCAGTTTGTCATGCCTGATCTTGTGAACACTATGTCCG 1131
| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1000 -AGTCCTTCAACTGGTGCTATATCAGTTTGTCATGCCCGATCTTGTGAACACAATGTCTG 1058
Query 1132 CCCTTTTCTTGAGGCTTCCTTTCTCCAGAAAGATGGAGATAGAAGCAGACTACATCGGTT 1191
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1059 CTCTTTTCTTGAGGCTTCCTTTCTCCAGAAAGATGGAGATAGAAGCGGATTACATTGGTT 1118
Query 1192 TGCTGTTACTTGCATCTGCGGGCTATGACCCACGAGTAGCTCCCACAGTGTATGAGAAGC 1251
|||| ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 1119 TGCTATTACTTGCATCAGCGGGATATGACCCACGAGTAGCTCCGAAAGTGTATGAGAAGC 1178
Query 1252 TGGGA-AAGCTCGGTGGAGACGCACTCGGAGATTATCTATCGACCCATCCGTCGGGAAAA 1310
| ||| || ||||||||| ||| ||| | ||||||||||||||| |||||||| ||||||
Sbjct 1179 TTGGACAA-CTCGGTGGAAACGTACTTGCAGATTATCTATCGACACATCCGTCTGGAAAA 1237
Query 1311 AAGAGATCAAAACTTTTGGCTCAAGCCAATGTGATGGAAGAAGCACTAATGATATATAGA 1370
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1238 AAGAGATCACAACTTTTGGCTCAAGCCAATGTGATGGAAGAAGCACTAATGATCTATAGA 1297
Query 1371 GAAGTCCAAGCAGGTCGTAC-TGGCGTTGAAGGCTTTCTTTAGC-TCTTCACCATTCATC 1428
||||||||| ||||||| | ||||||||||||||||||||||| ||||| | |||||||
Sbjct 1298 GAAGTCCAATCAGGTCGC-CGTGGCGTTGAAGGCTTTCTTTAGCCTCTTCTCTATTCATC 1356
Query 1429 TCGTCTGCTTCTGTACATTATTTCTCCTCCACCTCCATTAATCATGTGGAATGTTATGTT 1488
||| |||||||||||||||||| ||| ||||| | ||||||||||| | |||||||| |
Sbjct 1357 TCGCCTGCTTCTGTACATTATTACTC-TCCACA-C-ATTAATCATGTTGCATGTTATGGT 1413
Query 1489 AGTATGTTTATGTCGTTAAATTGATTGGTGCAATAGAATGATTCCGATTGAGACGTATAG 1548
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1414 AG-ATGTTTATATCGTTAAATTGATTGGTGCAATAGAATGATTCCGATTGAGACGCATAG 1472
Query 1549 TTGGATATTTTGGTCT 1564
|| |||||||||||||
Sbjct 1473 TTTGATATTTTGGTCT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5