BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51760.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495242 jgi|Araly1|495242|fgenesh2_kg.8__1058__AT5G51760.1 1984 0.0
> Ahg495242 jgi|Araly1|495242|fgenesh2_kg.8__1058__AT5G51760.1
Length=1392
Score = 1984 bits (1074), Expect = 0.0
Identities = 1296/1401 (93%), Gaps = 23/1401 (2%)
Strand=Plus/Plus
Query 1 ATGACTGAAATCTACAGAACAATTTCAACCGGACGTGGAGACGACGTTTCTCCGACTAAA 60
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACTGAAATTTACAGAACAATTTCCACCGGACGTGGAGACGACGTTTCGCCGACTAAA 60
Query 61 TGCCGTGAACGTCGTCGTCGGAGAATTGAGATGCGGAGACAAGCGGCGGTTTTCGGCGAA 120
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TGCCGTGAGCGCCGTCGTCGGAGAATCGAGATGCGGAGACAAGCGGCGGTTTTCGGCGAT 120
Query 121 CCTAGTTCGTCTAGGAATCGTGATCGGACGGACATGGAAGTTTACTCAAGTTTTGACGTT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 121 CCTAGTTCGTCTAGGAATCGTGATCGGACGGACATGGAAGTTTATTCAAGTTTTGCCGTT 180
Query 181 CCATTGAGGAAACAAGCTCGGAGGTCAGAGATCGGTGGTCTTCCGGCGGATATCGGGGGC 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 CCATTGAGGAAACAAGCTCGGAGGTCAGAGATTGGTGGTCTTCCGGCGGATATCGGAGG- 239
Query 241 TTT-TTGGCACCTCCGGCGGCATCTTCTTGCCAAAAATCGGAAGCGCCGGTGTGGAAGGG 299
||| | |||||| || ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 240 TTTCATAGCACCT---TCGACATCTTCTTGCCAAATATCGGAAGCACCGGTGTGGAAGGG 296
Query 300 AGAAGAAACGGAGGATGAGCCGTTGTACGGTATAGTTTCGGTTATGGGAAGATCTCGTAA 359
||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 297 AGAAGAACCGGAGGAGGAGCCGTTGTACGGAATAGTTTCCGTTATGGGAAGATCTCGTAA 356
Query 360 GATGGAGGATTCGGTTACTGTTAAACCGAATTTGTGCAAACCGGAAG-TTAACCGGCAAA 418
|||||||||| |||||| |||||||||||||||||| ||||||| || |||||||| |||
Sbjct 357 GATGGAGGATACGGTTAATGTTAAACCGAATTTGTGTAAACCGG-AGTTTAACCGGAAAA 415
Query 419 GACCGGTTCATTTCTTTGCG-GTATACGATGGCCACGGCGGTTCTCAGGTGTCAACATTG 477
|||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 416 GACCTGTTCATTTCTTCG-GTGTATACGATGGCCACGGCGGTTCTCAGGTGTCAACATTA 474
Query 478 TGCAGCACGACTATGCACACGTTTGTCAAGGAGGAGCTAGAGCAAAACCTCGAAGAGG-A 536
||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
Sbjct 475 TGCAGCACGACGATGCACACGTTAGTTAAGGAGGAGCTAGAGCAAAACCTAGAAGAGGAA 534
Query 537 GGAAGAAGGAAGCGAAAACGATGTCGTGGAGAGGAAATGGCGGGGCGTGATGAAACGGAG 596
|| || ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 535 GG-AGGAGGAAGCGAAAACGACGTCGTGGAGAAGAAATGGCGGGGAGTGATGAAACGGAG 593
Query 597 TTTCAAGAGGATGGATGAGATGGCAACGAGTACATGCGTGTGTGGGACTAGTGTGCCGTT 656
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 594 TTTCAAGAGGATGGATGAGATGGCCACGAGCACATGCGTGTGTGGGACTAGTGTGCCTTT 653
Query 657 GTGTAACTGTGATCCGAGGGAGGCTGCGATTTCGGGTTCAACGGCGGTCACT-GCGGTTT 715
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 654 GTGTAACTGCGATCCGAGGGAGGCTGCGATTTCGGGTTCAACGGCGGT-TGTGGCGGTTT 712
Query 716 TGACGCACGATCATATTA-TTGTAGCCAATACTGGTGACTCACGTGCGGTGTTGTGTCGA 774
||||||| ||||||| || | |||||||| ||||||||||||||||| ||||||||||||
Sbjct 713 TGACGCAAGATCATA-TAGTAGTAGCCAACACTGGTGACTCACGTGCCGTGTTGTGTCGA 771
Query 775 AATGGAATGGCTATTCCTCTGAGTAACGATCACAAGCCGGATAGACCAGACGAGCGTGCG 834
| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 772 AGTGGATTGGCTATTCCTCTTAGTAACGATCACAAGCCGGATAGACCAGATGAGCGTGCG 831
Query 835 AGGATTGAAGCAGCTGGTGGTCGAGTTTTAGTAGTGGATGGAGCTAGAGTTGAAGGAATT 894
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGGATCGAAGCAGCTGGTGGTCGAGTTTTAGTAGTGGATGGAGCTAGAGTTGAAGGAATT 891
Query 895 CTAGCCACGTCCAGAGCCATAGGGGACAGGTATCTAAAACCAATGGTAGCATGGGAACCA 954
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 CTAGCCACGTCGAGAGCCATAGGGGACAGGTATCTGAAACCAATGGTAGCATGGGAACCA 951
Query 955 GAAGTAACATTCATGAGAAGGGAATCTGGAGATGAATGCTTAGTATTAGCAAGCGATGGG 1014
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 952 GAAGTAACATTCATGAGAAGGGAAGCTGGAGATGAATGCTTAGTATTAGCAAGCGATGGG 1011
Query 1015 CTTTGGGATGTACTCTCGAGTCAGCTAGCTTGTGACATAGCTAGGTTTTGTCTCCGCGAA 1074
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1012 CTTTGGGATGTGCTCTCGAGTCAGCTAGCTTGTGACATAGCTAGGTTTTGTCTCCGGGAA 1071
Query 1075 GAAACTCCCTCGAGCCTTGATTTAAATAGAATGGCTCAAGAAGACGACAATGACGGAGAA 1134
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 1072 GAAACTCCCTCAAGCCTTGATTTAAACAGAATGGCACTAGAAGACGACAATGACGGAGAA 1131
Query 1135 CAAAATCCTTCAAGGAGTGTATTGGCTGCAACGTTGCTAACGCGGTTGGCTTTGGGTAGA 1194
|| || ||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct 1132 CAGAACCCTTCAAGGAGTGTATTGGCTGCAACGTTACTTACTCGGCTGGCTTTGGGTAGA 1191
Query 1195 CAAAGCAGTGATAATATAAGTGTGGTCGTCATTGATCTCAAGAATAGCTCTCAGTAAAAC 1254
||||||||||| |||||||||||| | ||||||||||||||||||| | || | ||| ||
Sbjct 1192 CAAAGCAGTGACAATATAAGTGTGATTGTCATTGATCTCAAGAATAACACTTAATAATAC 1251
Query 1255 TAGTTTTGGATCCtttttttGGTGGTTGTGCAATTAAGTGGTTAAACCAAAGAATAAGAT 1314
| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 TGGTTTTGGATCGGTTTTTGGGTGGTTGTGCAATTAAGAGGTTAAACCAAAGAATAAGAT 1311
Query 1315 GTTGATATAGCGATGAGCCTTAATTAGTTTTAGGGTTTAGC--G--CC--C--GTCTTTG 1366
||||||||||||||||||||| ||||||||||||||||||| | || | |||||||
Sbjct 1312 GTTGATATAGCGATGAGCCTTGATTAGTTTTAGGGTTTAGCCAGTGCCGGCCCGTCTTTG 1371
Query 1367 TTTTGTTATGAATTGGGGTTA 1387
|||||| | ||||||||||||
Sbjct 1372 TTTTGTGAGGAATTGGGGTTA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5