BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51770.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357414 jgi|Araly1|357414|fgenesh1_pg.C_scaffold_8001201 1389 0.0
Ahg945550 jgi|Araly1|945550|scaffold_701779.1 529 4e-149
> Ahg357414 jgi|Araly1|357414|fgenesh1_pg.C_scaffold_8001201
Length=1794
Score = 1389 bits (752), Expect = 0.0
Identities = 904/974 (93%), Gaps = 23/974 (2%)
Strand=Plus/Plus
Query 1 ATGCCGTCACGAACACTCCCGTCGCCGGCACCGGTAAATTCACCGTTCTCTTCCTCCGTC 60
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGCCGTCACGAACACTCCCGTCGCCGGCTCCGGTAAATTCACCATTCTCTTCCTCCGTC 60
Query 61 ACACCTCACCATGAAACAACCACCACACGCATCTTCCCTCCTCTTGCAGCTGTAGGTTTC 120
| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCTTCTCACCATGATAGAACCACCACACGCATCTTCCCTCCGCTTGCAGCTGTAGGTTTC 120
Query 121 TCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACGCCGATCTCCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACGCCGATTTCCC 180
Query 181 GCCGCCGTAGCCTCCTCCTC-TACACCGCCGCAGAAACAACCGTTACACGAGTTCTCCTA 239
||||||||| |||| ||||| | |||| |||||||||| || |||||||| ||||||||
Sbjct 181 GCCGCCGTAACCTCATCCTCGT-CACCACCGCAGAAACCTCCATTACACGAATTCTCCTA 239
Query 240 CTCATCTCTCCGTAAAGCCACCGCTTCTTTCTCACCGGAGAATCGACTAGGTCAAGGCGG 299
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 240 CTCATCTCTCCGTAAAGCCACCTCCTCTTTCTCACCGGAGAATCGACTTGGTCAAGGCGG 299
Query 300 ATTCGGCTCTGTATTCCGTGGAACTTTATCTCCTTCCTCCGGTGGTGGTAATGTCGCCGT 359
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 ATTCGGCTCTGTCTTCCGTGGAACTTTATCTCCTTCCTCC---GGTGGTAATGTCGCCGT 356
Query 360 TAAAGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAACGAGCTTTTCTT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAAGGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAACGAGCTTTTCTT 416
Query 420 CGCTGGTAAGCTTGATTCTCCTCATGTAGTTTCCGTTATTGGCTTCTCTCGACGACGACG 479
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 417 CGCCGGTAAGCTTGATTCTCCTCATGTTGTTTCCGTTATTGGCTTCTCT---CGACGACG 473
Query 480 AAGCCGTTTGATTCTTGTATACGAGCTTATGGATATTGGAAATCTTCAAGATGCTCTTCT 539
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 474 AAGCCGTTTGATTCTTGTCTACGAGCTTATGGATAATGGAAATCTTCAAGATGCTCTTCT 533
Query 540 TCATCGTAGATCTCCTGAGCTTATGATATGGAATCGAAGATTTCTCGTTGCGATTGATAT 599
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 534 TCTTCGTAAATCTCCTGAGCTTATGATATGGAATAGAAGATTTCTTGTTGCCATTGATAT 593
Query 600 AGCTAAAGGGATTGAACATTTACATAGCTTGAATCCTT-GTGTGATTCATGGAGATTTGA 658
|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 594 AGCTAAAGGGATTGAATATTTACATAGCTTGAAT-CTTCCTGTGATTCATGGAGATTTGA 652
Query 659 AACCTAGTAATGTATTGTTGGATCGATTCTTCTCTGCTAAGATCTCTGATTTTGGTTTAG 718
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AACCTAGTAATATATTGTTGGATCGATTCTTCTCTGCTAAGATCTCTGATTTTGGTTTAG 712
Query 719 CTAGGTTGAAATCTGAACATGTTGAAGTTAAAGTAGTGTCTGAGAGTGATG---T-A--G 772
|||||||||||||||||||||||||||||||||||| || |||||||||| | | |
Sbjct 713 CTAGGTTGAAATCTGAACATGTTGAAGTTAAAGTAGCATCGGAGAGTGATGAAGTCAATG 772
Query 773 T-G-G-AAGATTATGGTTCTGTAGTTGAAGAAGTTGAGAGTGTTGTTACTAATACTACTG 829
| | | |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 773 TAGTGGAAGATTATGGATCTGTAGTTGAAGAAGTGGAGAGTGTGGTTACTAATACTACTG 832
Query 830 GTTGTGATGAATCTAACTTTGGATTCACTGATCAGTCTCCGGTGCCTCTTTCATCGCCGG 889
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTTATGATGAATCTAACTTTGGATTCACTGATCAGTCTCCGGTGCCTCTTTCATCGCCGG 892
Query 890 AGATGGTGG-AGCAGG-TGCCTATGACGTCACCGGAGACAGTTGTATCGGTTTCTCCGGA 947
||||||||| | |||| | |||||| | || ||||| ||||||||||| ||||| |||||
Sbjct 893 AGATGGTGGCA-CAGGCT-CCTATGGCATCGCCGGAAACAGTTGTATCTGTTTCGCCGGA 950
Query 948 GATGGGGGAGAAAG 961
|||||||||||||
Sbjct 951 AATGGGGGAGAAAG 964
Score = 1341 bits (726), Expect = 0.0
Identities = 801/837 (96%), Gaps = 5/837 (1%)
Strand=Plus/Plus
Query 1133 AGAAAGTTGAGAAGAAGAAGAGTAGTAAGAGATTAGAATGGTGGC-TTTCGTTGGATgaa 1191
|||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 959 AGAAAGTTGAGAAGAAGAAGAGTAGTAAGAAATTAGAAT-GTTGCTTTTCGTTGGATGAA 1017
Query 1192 gagaaggagaa-ggg--gaagaagaagaagcggagaatggtgagagagtggtggaaagaT 1248
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 GAGAAGGAGAAGGGGAAGAAGAAGAAGAAGCGGAGAATGGTGAGAGAGTGGTGGAAGGAT 1077
Query 1249 GAGTATAGGAAAGAGCTTGCTaagagaatgaagaagaagaagaagaagaaAACTTTGGAG 1308
|||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1078 GAGTATCGGAAAGAGCTTGCTAAGCGAATGAAGAAGATGAAGAAGAAGAAAACTTTGGAG 1137
Query 1309 TCTGAGTTTTATAGTGATGATGTGAGTGGAAGTGTGGATCAAAGGCGGCACGGGGATGGA 1368
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1138 TCTGAGTTTTATAGTGATGATGTGAGTGGAAGTGTGGATCAAAGGCGGGGCGGGGATGAA 1197
Query 1369 GAAGTGTATAGGAAGAAAAGAAGAGGTGTTAGTAGTAACAGTATAGGTAGTAGCATAGAC 1428
||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1198 GAATTGTATAGGAAGAAAAGAAGAGGTGGTAGTAGTAACAGTATAGGAAGTAGCATAGAT 1257
Query 1429 TGGTGGTTAGATGGGCTAAGCGGTGAACAATGGAGAGCACGGCGTAGAAACAGTCAAGAT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGGTGGTTAGATGGGCTAAGCGGTGAACAATGGAGAGCACGGCGTAGAAACAGTCAAGAT 1317
Query 1489 TCAGTTAAGAGTTGCGGAGTCAGTAGCACGCCGAGCATGAGAGGGACGATGTGCTATGTT 1548
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1318 TCAGTTAAGAGTTGCGGAGTCAGTAGCACGCCGAGCATGAGAGGGACAATGTGCTACGTT 1377
Query 1549 GCTCCTGAGTGTTGTGGTAATAACATAGATGATGTGTCTGAAAAATCTGATGTGTATAGC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCTCCTGAGTGTTGTGGTAATAACATAGATGATGTGTCTGAAAAATCTGATGTGTATAGC 1437
Query 1609 TATGGAGTTTTGTTGTTAGTCCTGGTTTCAGGACGGCGGCCGCTGGAAGTAACTGGACCC 1668
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 TACGGAGTTTTGTTGTTAGTCTTGGTTTCAGGAAGGCGGCCGCTGGAAGTAACTGGACCC 1497
Query 1669 GCGTCTGAGATCATGCTGCGTGCAAATCTCATGTCGTGGGCGAGGAAGCTGGCGAGAAGA 1728
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1498 GCGTCTGAGATCATGCAGCGTGCTAATCTCATGTCGTGGGCGAGGAAGCTTGCGAGAAGA 1557
Query 1729 GGGAGACTCGGTGATCTGGTGGATGAAAAGCTGCAGTTGTTAGACCAAGAACAAGCGGTT 1788
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1558 GGGAGACTCGGTGATCTGGTAGATGAAAAGCTGCAGTTGTTAGACAAAGAACAAGCGGTT 1617
Query 1789 TTGTGCATTAAGGTGGCTTTGCAATGTCTGCAAAAATCACCGGTTTCACGACCTTCAATG 1848
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1618 TTGTGCATTAAGGTGGCTTTGCAGTGTCTGCAAAAATCCCCGGTTTCACGACCTTCAATG 1677
Query 1849 AAAGATGTTTTAGAAATGCTTACAGGAGCGATAAGCCCACCGGATTTGCCTACAGAATTC 1908
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1678 AAAGATGTTTTAGAAATGCTTAGAGGAGCGATGAGCCCACCGGATTTGCCTACAGAGTTC 1737
Query 1909 TCACCATCACCGCAGACTCGGTTCCCGTTCAAGGCACGAAGGAAGCAGAATCGATAG 1965
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1738 TCACCATCACCGCAGACTCGCTTCCCGTTCAAGACACGAAGGAAGCAGAATCGGTAG 1794
> Ahg945550 jgi|Araly1|945550|scaffold_701779.1
Length=1990
Score = 529 bits (286), Expect = 4e-149
Identities = 992/1312 (76%), Gaps = 132/1312 (10%)
Strand=Plus/Plus
Query 115 GGTTTCTCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACG-CCG 173
||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||| |
Sbjct 159 GGTTTCTCTCTCTTCATCACTCTCTCCGTCTGTTTCTGCAAATTCAGCCGGAAACGTTC- 217
Query 174 ATCTCCCGCC-GCCGTAGCCTCCTCCTCTACACCGCCGCAGAAA-CAACCGTTACACGAG 231
||| || || || | | | |||||||| |||| | |||| | |||| || |||
Sbjct 218 ATC-ACCTCCGGCGGAAAACGCCTCCTCT---TCGCCTCGGAAATC-ACCGCCACGTGAG 272
Query 232 TTCTCCTACTCATCTCTCCGTAAAGCCACC-GCTTCTTTCTCACCGGAGAATCGACTAGG 290
|| ||||| || ||||||||| |||||| || |||||||| || | |||||| |||||
Sbjct 273 TTTTCCTATTCGTCTCTCCGTCGCGCCACCGGC-TCTTTCTCGCCAGCGAATCGTCTAGG 331
Query 291 TCAAGGCGGATTCGGC-TCTGTATTCCGTGGAACTTTATCTCCTTCCTCCGGTGGTG-GT 348
|||||||||||||||| || ||||| |||||||| || | |||||| || | |
Sbjct 332 TCAAGGCGGATTCGGCGTC-GTATTTCGTGGAAC--TA------T-CTCCGGCGGCGAG- 380
Query 349 AATGTCGCCGTTAAAGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAAC 408
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 381 AATGTCGCCGTTAAAGTAATGGATTCAGGATCTCTTCAAGGAGAAGGTGAGTTTCAGAAC 440
Query 409 GAGCTT-TTCTTCGCTGGTAAGCTTGATTCTCCTCATGTAGTTTCC-GTTATTGGCTTCT 466
||| || |||||||| | |||||||| || ||||| || || || |||||||||||||
Sbjct 441 GAG-TTGTTCTTCGCCGCCAAGCTTGACTCGCCTCACGTTGTC-CCTGTTATTGGCTTCT 498
Query 467 CTCGACGA-CGA---CGAAGCCGTTTGATTCTTGTATACGAGCTTATGGATATTGGAAAT 522
||| |||| ||| ||| | |||||| ||||||| ||| |||| ||||| | ||| ||
Sbjct 499 CTC-ACGATCGAAAACGACGACGTTTGCTTCTTGTTTACAAGCTCATGGACAATGGTAAC 557
Query 523 CTTCAAGATGCTCTT-CTTCATCGTAGAT-CTCCTGAGCTTATG-ATATGGAATCGAAGA 579
|| ||||| || || ||||| || |||| | |||||||||||| || |||||||| ||
Sbjct 558 CTCCAAGACGCG-TTGCTTCACCGGAGATGC-CCTGAGCTTATGGAT-TGGAATCGGAGG 614
Query 580 TTTCTCGTTGCGATTGATATAGCTAAAGGGATTGAACAT-TTACATAG-CTTGAATCCTT 637
||| | |||||| || | | || | |||||||| || || ||||| |||||| ||
Sbjct 615 TTTTTGGTTGCGGTTAACGTTGCGGATGGGATTGAGCACCTT-CATAGTCTTGAA-CCAC 672
Query 638 GTGTGATTCATGGAGATTTGAAA-CCTAGTAATGTAT-TGTTGGATCGAT-TCTTCTCTG 694
|||||||||||| ||| | ||| ||||| ||||| | | |||||| || |||||||||
Sbjct 673 CTGTGATTCATGGTGATAT-AAAGCCTAGCAATGT-TCTATTGGATA-ATCTCTTCTCTG 729
Query 695 CTAAGATCTCTGATTTTGGTTTAGCTAGGTTGAAATCTGAACATGTTGA-AGTTAA-AGT 752
| || ||| ||||||||||| | |||||||||||| | || || || || | ||| | |
Sbjct 730 CCAAAATCGCTGATTTTGGTCTGGCTAGGTTGAAACCGGAGCAAGTGGAGA-TTACTA-T 787
Query 753 AGTGTCTGAGAGTGATGTAGTGGAAGATTATGGTTCTGTAGTTGAAGAAGTTGAGAGTGT 812
|| | | ||| |||||| ||| | | || ||| | ||||||||||| || |||||
Sbjct 788 AGCGCCGGAGCGTGATG--GTG-A---T---GGATCTATGGTTGAAGAAGTAGACAGTGT 838
Query 813 TGTTA-CTAATACT-ACTGGTTGTGATGAATCTAACTTTGGATTCACTGATCAGTCTCCG 870
| || ||| | | ||||||| ||| || | ||||||||| || ||||||||| |||
Sbjct 839 -GATAACTACTG-TGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTCGCCG 896
Query 871 GTGCC-TCTTTC-ATCG--CC-GGAGATGGTGGAGCAGGTGCCTATGACGTC-ACCGGAG 924
| | | || | | | || || | | || | || ||| | | || || | |
Sbjct 897 G-GAAGTGTTGCTAAGGTTCCTGG-G-TC-TGT-G-AG-TGCTTC-GCCGGAGACTGC-G 947
Query 925 ACAGTTGTATCGGTTTCTCCGGAGATGGGGGAGAAA--GGAAGTG--TGTTGG-AG-GT- 977
|| ||||| || ||||||||||| |||||||||||| ||| | | || ||| | ||
Sbjct 948 ACGGTTGTCTCTGTTTCTCCGGAAATGGGGGAGAAAACGGATGAGGATGGTGGTAATGTG 1007
Query 978 -TGGT-A-AT-GT-GGTGAG-GAG--T-A-A--AGA--TTGGTGGTGGAAGCAAGA-AGG 1022
|||| | | | || || ||| | | | ||| ||||||||||||||| || ||
Sbjct 1008 GTGGTGACAAAGAAGGGGAAAGAGACTGAGAGTAGAGATTGGTGGTGGAAGCAGGAGAGC 1067
Query 1023 GAATGTTGGAAGAGGGAAAGGGAAGGAGTATGTGATGCAATGGATTGGTTCTGAGGTGAA 1082
||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 1068 -AATGTTGAAAGAGGGAAAGTGAAGGAGTATGTGATGCAATGGATTGGTTCAGAGGTTAA 1126
Query 1083 GGAAG-AGAGACAGAGTAGTG---ATTGGATTGCTGAGACGGCG--GAAG--G-CG---- 1129
| ||| |||||| ||| || | | ||||||| | ||| || | | ||
Sbjct 1127 G-AAGGAGAGACCGAGCAGAGCCGACTGGATTGAGGCGACAGCTTTGTCTTCGTCGTCAA 1185
Query 1130 GTAAGAAAGTTGAGAAGAAGAAGAGTAGTAAGAGATTAGAATGGTGGCTT-TCGTTGGAT 1188
|||||||| |||||||||||| ||| |||||| ||||||||||| || || | ||
Sbjct 1186 GTAAGAAACTTGAGAAGAAGAC---TAGCAAGAGACTAGAATGGTGG-TTGTCACTAGAG 1241
Query 1189 gaagagaaggagaaggggaagaagaagaagcggagaatggtgagagagtggtggaaagaT 1248
|||||| | |||||| |||| |||||||||||| ||||| || |||||||||||||||
Sbjct 1242 GAAGAGGATGAGAAGAATAAGAGGAAGAAGCGGAGGATGGTTAGGGAGTGGTGGAAAGAT 1301
Query 1249 GAGTATAGGAAAGAGCTTGCTaagagaatgaagaagaagaagaagaagaaAACTTTGGA- 1307
|||||| | | ||| || ||||||| || ||||||||||||||||||| ||||| ||
Sbjct 1302 GAGTATCGTAGAGAACTCGCTAAGA-AA--AAGAAGAAGAAGAAGAAGACGACTTTAGAA 1358
Query 1308 GTCTGAGTTTTATAGTGATGATGTGA-GTGGAAGTGTG-GATCAAAGGCGGC 1357
| |||| |||| ||||||||||| || || | |||||| | |||| ||||||
Sbjct 1359 G-CTGAATTTTGTAGTGATGATG-GAAGTAGTAGTGTGAG-TCAATGGCGGC 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5