BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51780.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495243 jgi|Araly1|495243|fgenesh2_kg.8__1059__AT5G51780.1 1358 0.0
Ahg492289 jgi|Araly1|492289|fgenesh2_kg.7__1722__AT4G25400.1 169 4e-41
> Ahg495243 jgi|Araly1|495243|fgenesh2_kg.8__1059__AT5G51780.1
Length=916
Score = 1358 bits (735), Expect = 0.0
Identities = 867/926 (94%), Gaps = 28/926 (3%)
Strand=Plus/Plus
Query 1 GGGACAAGAGAAGAAGACGGTGTACGAAGCTGACATGTGGTACTGATAAT---AACGACA 57
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 1 GGGACAAGAGAAGAAGACGGTGTACGAAGCTGACATGTAGTACAGATAATAACAACGACA 60
Query 58 TGGAGAAGATGATGCACAGAGAAACTGAGAGGCAAAGGAGACAAGAAATGGCTTCTCTTT 117
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGGAGAAGATGATGCATAGAGAAACTGAGAGACAAAGGAGACAAGAAATGGCTTCTCTTT 120
Query 118 ATGCCTCTCTTCGTTCTCTTCTCCCTCTTCACTTCATCAAGGGTAAGCGTTCGACGTCAG 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGCTTCTCTTCGTTCTCTTCTCCCTCTTCACTTCATCAAGGGTAAGCGTTCGACGTCAG 180
Query 178 ATCAAGTCAACGAGGCGGTGAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGCTAA 237
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATCAAGTCAACGAGGCGGTTAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGCTGA 240
Query 238 GTGTGAGGAGAGATGATCTCATGGTACTGTCTAGAGGAAGTTTATTGGGTAGTAGTAATG 297
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 241 GTGTGAGGAGAGATTATCTCATGGTACTGTCTAGAGGAAGCTTCTTGGGTAGTAGTAATG 300
Query 298 GTGATTTTAAGGAAGATGTGGAGATGATAAGTGGGAAAAATCATGTGGTGGTTCGTCAGT 357
||||| |||||| || ||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 301 ATGATTCTAAGGAGGAGGTGGAGATGATGAGTAGGAAGAATCATGTGGTGGTTCGTCAGT 360
Query 358 GTTTGGTTGGTGTGGAAATCATGTTGAGTAGCCGCTGCTGCGGTGGCCAACCGCGGTTTT 417
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTGGTGGGTGTGGAAATCGTATTTAGTAGCCGCTGCTGCGGTGGCCAACCGCGGTTTT 420
Query 418 CGAGTGTTCTTCAAGTGCTTAGTGAATATGGTCTCTGCCTTCTTAACTCCATCTCCTCTA 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CGAGTGTTCTTCAAGTGCTTAGTGAACATGGTCTCTGCCTTCTTAACTCCATCTCCTCTA 480
Query 478 TTGTTGATGATAGGCTAGTTTACACCATACAGGCCGAGGTCAACGATATGGCTTTGATGA 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGTTGATGATAGGCTAATTTACACCATACAGGCCGAGGTCAACGATATGGCTTTGATGA 540
Query 538 TTGACTTAGCAGAACTTGAAAAGAGATTAATCAGAATGAAGTAAATTCTTGTTGAGTAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGACTTAGCAGAACTTGAAAAGAGATTAATCAGAATGAAGTAAATTCTTGTTGAGTAGG 600
Query 598 TTGCTCT--TAACTTGTCAAGTAAACGACATATATAGTTAAGTACGTACTTTATTCGTAC 655
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGCTCTAATAACTTGTCAAGCAAACGACATATATAGTTAAGTACGTACTTTATTCGTAC 660
Query 656 CTGTGATTGTTGTGTCGTGTTCACATCTATCTGTATGTATATTATGTT-TATTCCATCTG 714
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 661 TTGTGATTGTTGTGTCGTGTTCACATCTATCTGTATGTATAT-AT-TTCTATTCCATCTG 718
Query 715 ATTGTCATTAGCTCATTTAGTTGTTTATAGATCGGAAAATTATGTTTCCCATAAGCTGAG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTGTCATTAGCTCATTTAGTTGTTTATAGATCGGAAAATTATGTTTCCCATAAGCTGAG 778
Query 775 TTAGTAC-TTCATGGTTATATGtttttt--ttAATATT--TTATGGTTATATGCTATGAT 829
||||||| || || || | | |||||| ||||||| ||||||||||||||||||||
Sbjct 779 TTAGTACCTT-ATC-TT-T-T-TTTTTTCCTTAATATACGTTATGGTTATATGCTATGAT 833
Query 830 TGGGATTTTATTTGA-TCAATTTCAAAAAGAA-ATTAAAGTTTTT-AGTGGTGTCTAG-- 884
||||||||||||| | | ||||||||||| || || ||||||||| | ||||||||||
Sbjct 834 TGGGATTTTATTTTAATAAATTTCAAAAA-AACAT-AAAGTTTTTGA-TGGTGTCTAGCT 890
Query 885 -G-CAGTGTTTGAAGCTGGTAGCATT 908
| ||||||| |||| ||||||||||
Sbjct 891 AGGCAGTGTTCGAAGTTGGTAGCATT 916
> Ahg492289 jgi|Araly1|492289|fgenesh2_kg.7__1722__AT4G25400.1
Length=551
Score = 169 bits (91), Expect = 4e-41
Identities = 196/245 (80%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 57 ATGGAGAAGATGATGCACAGAGAAACTGAGAGGCAAAGGAGACAAGAAATGGCTTCTCTT 116
|||||||| | | | |||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGAA-A-G-TACACAAAGAAGTTGAGAAACAAAGGAGACAAGAAATGGCTTCTCTT 57
Query 117 TATGCCTCTCTTCGTTCTCTTCTCCCTCTTC-ACTTCATCAAGGGTAAGCGTTCGAC-GT 174
|| | ||||| || |||||||||| | || | |||||| |||| ||||||||||| |
Sbjct 58 TACACGTCTCTCCGCTCTCTTCTCC-TGTTGGAGTTCATCCAGGGAAAGCGTTCGACAG- 115
Query 175 CAGATCAAGTCAACGAGGCGGTGAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGC 234
||||||| || |||| ||||||||| ||||| ||||| | || ||||| |||||||| |
Sbjct 116 CAGATCAGGTGAACGGGGCGGTGAATTACATTGAGTATTTGCAAAGGAATATCAAGGA-C 174
Query 235 -TAAGTGTG-AGGAGAGATGATCTCATGGTACTGTCTAGAGGAAGTTTATTGGGTAGTAG 292
||||| | | ||||||||| ||| || || ||||| || |||| || | ||| |||||
Sbjct 175 ATAAGT-TCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTT-T-GGG-AGTAG 230
Query 293 TAATG 297
|||||
Sbjct 231 TAATG 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5