BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51790.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916799 jgi|Araly1|916799|Al_scaffold_0008_1550 905 0.0
> Ahg916799 jgi|Araly1|916799|Al_scaffold_0008_1550
Length=636
Score = 905 bits (490), Expect = 0.0
Identities = 591/636 (93%), Gaps = 21/636 (3%)
Strand=Plus/Plus
Query 1 ATGAATCCTTCTAACAATCCTAAAAAGACAAGGCACCAG---AGTCATATGCCTCAAGAA 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAATCCTTCTAACAATCCTAAAAAGACAAGGCACCAGATCAGTCATATGCCTCAAGAA 60
Query 58 AGAGATGAAACGAAGAAGGAGAAGAAGCTTCTCCACCGCAACATCGAACGACAAAGAAGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATGAAACGAAGAAGGAGAAGAAGCTTCTCCACCGCAACATCGAACGACAAAGAAGA 120
Query 118 CAAGAAATGGCGATCCTTTTCGCCTCTCTTCGTAGTCAGCTACCTCTAAAATACATC-A- 175
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CAAGAAATGGCCATCCTTTTCGCCTCTCTTCGTAGTCAGCTACCTCTAAAATACATCAAG 180
Query 176 -------------AGGGAAAGAGAGCCATGTCAGATCATGTAAACGGAGCAGTAAGTTTC 222
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 GCTCTTTCTTCGCAGGGAAAGAGAGCCATGTCAGATCATGTAAACGGAGCAGTAAATTTC 240
Query 223 ATCAAAGACACGCAAACAAGGATAAAAGATCTCTCCGCAAGAAGAGACGAGCTAAAGCGA 282
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||| | ||
Sbjct 241 ATCAAAGACACGCAAACACGGATAAAAGATCTCTCCTCTAGAAGAGACGAGCTAATGAGA 300
Query 283 GAGATTGGTGACCCTACTAGTCTAACTGGATCCGGATCCGGATCTGGATCAAGTAGATCG 342
|||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||
Sbjct 301 GAGATTGGTGACCCCACTAGTCGAACTGGATCCGGATCTGGATCTGGCTCAAGTAGATCG 360
Query 343 GAACCAGCTAGTGTCATGGTGCAACCGTGTGTGAGCGGCTTCGAGGTGGTTGTGAGCAGC 402
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct 361 GAACCAGCTAGTGTCATGGTGCAACAGTGCGTGAGCGGCTTCAAGGTGGTTGTGAGCAGC 420
Query 403 TTA--G-CATCAGGTCTCGAGGCTTGGCCACTCTCAAGAGTTCTTGAAGTTCTTCACGGG 459
| | | | |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 421 TCAGCGTCGTCAGGTCTTGAGGCTTGGCCACTCTCAAGAGTTCTTGAAGTTCTTCATGAA 480
Query 460 CAAGGACTTGAAGTCATCAGCTCTTTAACAGCACGAGTCAACGAGAGGCTCATGTACACT 519
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 CAAGGACTTGAAGTCATCAGCTCTTTAACCGCACGAGTCAACGAGAGGCTCATGTACACT 540
Query 520 ATACAAGTCGAGGTAAATAGCTTTGATTGCTTCGACTTAGCTTGGTTGCAGCAGAAGCTA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATACAAGTCGAGGTAAATAGCTTTGATTGCTTCGACTTAGCTTGGTTGCAGCAGAAGCTA 600
Query 580 ATTGAGCAGTTAGTACTTTCCACGACTAGGCACTGA 615
|||||| | ||||||||||||||||| |||||||||
Sbjct 601 ATTGAGGAATTAGTACTTTCCACGACCAGGCACTGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5