BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51800.1
Length=3151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357417 jgi|Araly1|357417|fgenesh1_pg.C_scaffold_8001204 4362 0.0
> Ahg357417 jgi|Araly1|357417|fgenesh1_pg.C_scaffold_8001204
Length=2922
Score = 4362 bits (2362), Expect = 0.0
Identities = 2755/2941 (94%), Gaps = 41/2941 (1%)
Strand=Plus/Plus
Query 127 ATGGGTGAGACAACAAAAGGAGATGCTACAAAACCACCACCGAATCAAATCTCCTCACCT 186
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGGTGAGACAACAAAAGGAGATGCTACAAAACCATCACCGAATCAAATCTCCTCACCT 60
Query 187 AAAGATTCTTCACTCGATCACCAAGCACCAAACCCATCACTCCTCCATCATCACCATCAT 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AAAGATTCTTCACTCGATCACCAAGCACCAAACCCATCACTCCTCCATCATCACCACCAC 120
Query 247 CACCACCAATCTTTCCTCCCTACTCCGATCTTCATACCCACCGTATCTTCTCCCGGAGCT 306
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 121 CACCACCAATCTTTCCTCCCTTCTCCGATCTTCATACCCACCGTCTCTTCTCCCGGAGCT 180
Query 307 CCGGTCATCCCCAAAAGACCACGTTTCAGCACTTCCAGTGGTCTCTCTCCTCCTCAATGG 366
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CCGGTAATCCCCAAACGACCACGTTTCAGCACTTCCGGTGGTCTCTCTCCTCCTCAATGG 240
Query 367 AAAGCCTTGCCGTCTCCTTCCACCGTCCCAACGGCTTCCACAATCTCTTCATCACCGACA 426
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 241 AAAGCCTTGCCGTCTCCTTCTACCGTCCCAACCGCCTCCACAATCTCTTCATCACCGACA 300
Query 427 CCTTCCACCGCCGTGGTAACAGCTTCTTCCACCGAAACCGCCGGATCTTCACCACCGGGT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CCTTCCACCGCCGTGGTAACAGCTTCTTCCACCGAAACCGCCGGATCTTCACCCCCGGGT 360
Query 487 CAAGAAGCGACCAACAGTGAAAAACAACAACAAC--CAA---AGAC-GGAGTCGTTTCAA 540
|||||||||||||||||||||||||||||||||| ||| | || |||||| ||||||
Sbjct 361 CAAGAAGCGACCAACAGTGAAAAACAACAACAACAACAACCTAAACCGGAGTCATTTCAA 420
Query 541 CATAAATTCAGAAAGGGCAAGTACGTTAGCCCAGTGTGGAAACCAAACGAGATGCTATGG 600
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CATAAATTCAGAAAAGGTAAGTACGTTAGCCCCGTGTGGAAACCAAACGAGATGCTATGG 480
Query 601 CTAGCAAGAGCCTGGAGAGCCCAGTACCAAACCCAAGGAACCGGGTCCGGATCCGGGTC- 659
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 481 CTAGCAAGAGCCTGGAGAGCCCAGTACCAAAACCAAGTAACCGGGTCCGGATCCGGATCC 540
Query 660 GGT-CG----AAGGAAGAGGCAAAACCCGTGCTGAAAAAGACAGGGAAGTAGCTGAGTAT 714
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGTTCGGGCGAAGGAAGAGGCAAAACCCGTGCTGAAAAAGACAGGGAAGTAGCCGAGTAT 600
Query 715 CTAAACCGACACGGTATAAACCGGGACTCTAAAATCGCCGGTACGAAATGGGACAACATG 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CTAAACCGACACGGTATAAACCGGGACTCAAAAATCGCCGGTACGAAATGGGACAACATG 660
Query 775 CTTGGTGAGTTTAGGAAAGTGTATGAATGGGAAAAATGTGGAGATCAGGACAAATACGGT 834
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 CTTGGTGAGTTTAGGAAAGTGTATGAATGGGAAAAATGCGGAGATCAGGACAAATACGGT 720
Query 835 AAGAGTTACTTCAGGCTCTCTCCTTACGAGAGAAAGCAACATCGACTTCCCGCGTCTTTT 894
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 721 AAGAGTTACTTCAGGCTCTCTCCTTACGAGAGGAAGCAGCATCGACTTCCCGCGTCTTTT 780
Query 895 GACGAAGAAGTCTATCAAGAACTAGCTCTTTTCATGGGTCCACGTGTCAGAGCTCCGACT 954
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 781 GACGAAGAAGTCTATCAAGAATTGGCTCTTTTCATGGGTCCACGTGTCAGAGCTCCGACT 840
Query 955 ATTAACCGTGGTGGCGGTGGCGGAGCTACGGTAACTGTTGCCTCAACGCCTCCGTCTGTT 1014
|||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 841 ATTAACCGCGGCGGCGGTGGCGGAGCTACGGTAACTGTAGCCTCAACGCCTCCATCTGTT 900
Query 1015 GAGGCGCTTCCTCCTCCTCTTTATCCAGCATTGATGACTTCAAGAGACGAATATGATATT 1074
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 901 GAGGCGCTTCCTCCTCCTCTTTATCCAGCATTGATGACGTCGCGAGACGAATATGATATT 960
Query 1075 GAAAACAACCCTATCCCTTCCATTGGAAGAGGGAAGCGTTTGGCATTATCACTAGTTGGA 1134
|| || ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 GATAATAACCCAATCTCTTCCATTGGAAGAGGGAAGCGTTTGGCATTATCACTACTTGGA 1020
Query 1135 GATGATCACCATCCTCAATATCCGTATGCACACAACATTGCTAGAGGATCAGGTTTATTC 1194
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1021 GATGATCA---TCCTCAATATCCGTATTCACACAACATTGCTAGAGGATCAGGTTTATTC 1077
Query 1195 TCTAATAAATCATTATACAATCCCTTTTTTGAGATGATTCcttcttcttcttcttcgtct 1254
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1078 TCTAATAAATCATTATACAATCCTTTTTTTGAGATGATTCCTTCTTCCTCTTCTTCGTCT 1137
Query 1255 tcCTCGCTGAGAGATCTTCGCCGTATTGGAAAAATACGGCTAACTTGGGAGGAATCGGTT 1314
||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 TCCTCACTGAAAGATCTTCGCCGTATTGGAAAAATACGGCTAACATGGGAGGAATCGGTT 1197
Query 1315 AACTTGTGGGCTGAAGGAG-AG--GTTGATTATGGGAGAATTAGGGTTAGTGGGTCGAGT 1371
|||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 1198 AACTTGTGGGCTGAAGAAGGAGATGTTGATTATGGGAGAATTAGGGTTAGTGGTTCGAGT 1257
Query 1372 TTCTTGAATGCGGATGAGCTCACATACTTGGATGATTCCATGGTGGCTTGTACAATGGAA 1431
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1258 TTTTTGAATGCGGATGAGCTCACATACTTGGATGATTCCATGGTGGCTTGTAAAATGGAA 1317
Query 1432 TCCTTCCAAGATGGACCTCTCAAGGGATTTTCTTTGGATAAATTTATTTCTGGTCAACAT 1491
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1318 TCCTTCGAAGATGGACCTCTCAAGGGATTTTCTTTGGATAAATTCATTTCTGGTCAACAT 1377
Query 1492 CTTAAAGTCTTTGGGAGACAAAGGTCAACTTCATCATCTGCTCCCTCACCTTCAGTAAAT 1551
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 CTTAAAGTCTTTGGAAGACAAAGGTCAACTTCATCATCTGCTCCTTCACCTTCAGTAAAT 1437
Query 1552 GTGGCTGGTGTGTTTGATCGACCTCAGCTTCAACTTTCAGAACCCATTTATAAATCAATA 1611
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 GTGGCAGGTGTGTTTGATCGACCTCAGCTTCAACTCTCAGAACCCATTTATAAATCAATA 1497
Query 1612 TCAACATTGGAGTTCCAAGACCCATCGGAGCATTGCTTAAGTAAATTGCGAGTGCCAGCC 1671
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1498 TCAACATTGGAGTTCCAAGACCCATCGGAGCATTTCTTGAGTAAATTGCGTGTGCCAGCA 1557
Query 1672 GGAAATC-TTCCCAGTTTATTTGAGCTCGCACGGTATCTTCAAGAACCACCGCCGGAAAA 1730
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GGAAA-CATTCCGAGTTTATTTGAGCTCGCACGGTATCTTCAAGAACCACCGCCGGAAAA 1616
Query 1731 TCTCCGGTTTCCTCTCCGGCCAGACGTCTACAAAGACTTGCCG-CAAGGAAAAGAGCTCT 1789
||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1617 TCTTCGGTTTCCTCTCCGACCAGACGTCTACAAAGACTTGCCGTCC-GGAAAAGAGCTCT 1675
Query 1790 TCTTCTCCATCTCCTCCACTGAGCTACTAGATTGTAGAGCAATCACATACGACATCATTG 1849
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
Sbjct 1676 TCTTCTCCATCTCCTCCACCGAGCTACTAGATTGTAGAGCAATCACATATGATGTCATCG 1735
Query 1850 GCCCCATAATGTCCCGCTTAAACTCTAATAATGGCTTCGTTATCTCGAGTAAAGACTCGC 1909
||||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| |
Sbjct 1736 GCCCCATAATGTCCCGCTTAAACCCTAATACCGGTTTCGTCATCTCGAGCAAAGACTCCC 1795
Query 1910 TGATCCCGCTTTGGGACGACTGCATTAACCGGATGGTTTCAAAGTTTTGTGAAATGGCGA 1969
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1796 TGATCTCGCTTTGGGACGACTGCGTTAACCGGATGGTTTCAAAGTTTTGTGAAATGGTGG 1855
Query 1970 TTTTGCGTAAACCGGATTCGTCTTCTTGCATAGAAAATGTACAACATCAGTGGCCAAACG 2029
||||||||||||| || ||||| ||||| || ||||| |||||| |||||||||||||||
Sbjct 1856 TTTTGCGTAAACCAGACTCGTCGTCTTGGATTGAAAACGTACAAGATCAGTGGCCAAACG 1915
Query 2030 TAATCGGATAT-GTTAAAGGATTTGGCTTATGGAGAGGAGAAGAAGCTGACAAGGTACGA 2088
| || |||| | || |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1916 TGATGGGAT-TCGTAAAAGGATTTGGCTTATGGAGAGGAGAAGAAACTGATAAGGTACGG 1974
Query 2089 GAAGGTGCTGCTGATCCTTCTTCTCTATTGGCCGAGAAGATTCTTTGGTCGTACAACGAT 2148
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1975 GAAGGGGCAGCTGATCCTTCTTCTCTATTGGTCGAGAAGATTCTTTGGTCGTACAACGAT 2034
Query 2149 CTTCCATATATTCTTGGATATCACGCAATAGGGTTCACCGTAACATTCTGCGCTTTGAGT 2208
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2035 CTTCCATACATTCTTGGATATCACGCAATAGGGTTCATTGTAACATTCTGCGCTTTGAGT 2094
Query 2209 CTATCATCACAAGATCGAGTGATCTGCACCGATCTTTATTCATTCAACGTCTCGTCACCG 2268
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2095 CTATCATCAGAAGATCGAGTGATCTGCACCGATCTTTATTCATTCAACGTCTCATCACCG 2154
Query 2269 TCGGATAGAATCAAGGCCTTGGTTCCTTGTTACCGTCTCGCTTCCCTTTTACCTTTGCTT 2328
|| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2155 TCCGATCGAATCAAGGCCTTGGTTCCTTGTTACCGTCTAGCTTCCCTTATACCTTTGCTT 2214
Query 2329 GCAGATCGGTGCACTACGAGGCCTTCATGCTACAATGACTTCGAGAGAATAGATCGTGGA 2388
||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||
Sbjct 2215 GCAGATCGGTGTACTACGAGGCCTTTATGCTACAACGACTTCGAGAGAATCGATCATGGA 2274
Query 2389 GATTATGTGACCGA-GTTAACGCCTCATACGGTGAC-AAGGTATTACTCAAGCAAAAGAA 2446
|||||||||||||| || ||||||| | |||||||| ||| |||||||||||||| |||
Sbjct 2275 GATTATGTGACCGAAGT-AACGCCTAACACGGTGACTAAG-TATTACTCAAGCAAGCGAA 2332
Query 2447 AATGGCTGGGTGTTAAAGGAATCTACGATTTTCTCGACCAAAGAGTTCCACACGCGGAGC 2506
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 AATGGATGGGTGTTAAAGGAATCTACGATTTTCTCGACCAAAGAGTTCCACACGCGGAGC 2392
Query 2507 ATTTGGATATGGCAAGCGAGAAGGATCTCTCGTTGAGTTTTAAGCCACGTGGAATCAGAG 2566
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2393 ATTTGGATAGGGCAAGCGAGAAAGATCTCTCGTTGAGTTTTAAGCCACGTGGAATCAGAG 2452
Query 2567 TCAAACCTCGAAACATTGACCAGCTCATCGACTCGCTGATGTGTGTGACTAAAGCGCTCC 2626
||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2453 TCAAACCACAAAACATTGACCAGCTCATCGACTCGCTGATGTGTGTGAGTAAAGCGCTCG 2512
Query 2627 TTGCACTTCACGACCTTTCTTTCATGCATCGTGACATGGGATGGGATAATGTAATGAGAA 2686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2513 TTGCACTTCACGACCTTTCTTTCATGCATCGTGACATGGGATGGCATAATGTAATGAGAA 2572
Query 2687 GCACGGCGACGACCACAACAACAACTGACACGGATTGGTTTGTTTGTGGGTTTGACGCTG 2746
|||||||||||| | | |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2573 GCACGGCGACGAT-A-A-CAACAACTGACACGGATTGGTTTGTTTGCGGGTTTGATGCTG 2629
Query 2747 CGGTCGAGGCCCCACAGCTTAACCCGCACCGCCCCGCGGACAAAGTGGT-A-GACAATGA 2804
| || |||||||| |||||||||||||||||||| | || ||||| || | | | ||
Sbjct 2630 CTGTTGAGGCCCCGCAGCTTAACCCGCACCGCCCTGTGGCCAAAGCAGTTATGG-AG-GA 2687
Query 2805 GGAGAGGGAGGATGAACGTGGGAGATACGCGCCGGAGATGGAGAGAGGCTTGCATGCGGT 2864
||| || |||| | ||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 2688 GGA-AG--AGGA-G--CGTGGGAGACACGCGCCGGAGATGGAGAGAGGATTGCATGCAGT 2741
Query 2865 GAAAGTAGATGTTTGGGGAGTGGGTTATATGATAAAGACGTGTGGATTGAGTAATGTACC 2924
|||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2742 GAAAGTGGATGTGTGGGGAGTGGGTTATATGATAAAGACTTGTGGATTAAGTAATGTACC 2801
Query 2925 AAAGATGTTGAGAGACCTTCAGGGGAAGTGTTTGGAACCAAACCAAGAGAACCGACCGAC 2984
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2802 AAAGATATTGAGAGACCTTCAGGGGAAGTGTTTGGAACCTAACCAAGAGAACCGACCGAC 2861
Query 2985 TGCAGCTGATTGCTTCCACCACCTTCTCCAGGTTCAATCAGCCAGTACATCGTCGTATTA 3044
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2862 CGCAGCTGATTGCTTCCACCACCTTCTCCAGGTTCAATCTGCCAGTACATCGTCGTATTA 2921
Query 3045 G 3045
|
Sbjct 2922 G 2922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119032015625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5