BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51810.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1 1908 0.0
> Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1
Length=1273
Score = 1908 bits (1033), Expect = 0.0
Identities = 1152/1209 (95%), Gaps = 10/1209 (1%)
Strand=Plus/Plus
Query 11 AACAAGAcaaaacaaaaaccccaaaactctcaag----aaa-aaaaaaag--aaaagaaa 63
||||| |||||| |||||||| |||||||||||| ||| |||||||| |||| |||
Sbjct 1 AACAAAACAAAAAAAAAACCCAAAAACTCTCAAGAAAAAAAGAAAAAAAGAAAAAAAAAA 60
Query 64 TGGCGATACTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCGATATTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 120
Query 124 TTGAAAAAGACCAAACTTCTCCACTAATCTTTAACCCTTCTCTTCTTAACCTCCAATCCC 183
||||||||||||||| ||||| ||||| |||| ||||| ||||| |||||||||||||
Sbjct 121 TTGAAAAAGACCAAA---CTCCATTAATCCTTAATCCTTCCCTTCTAAACCTCCAATCCC 177
Query 184 AAATCCCAAACCAATTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCAGAGC 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 178 AAATCCCAAACCAGTTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCCGAGC 237
Query 244 TCAACGTCCCGTTCATCGATCTCTCAAGCCAAGACTCGACTCTTGAAGCTCCTAGAGTCA 303
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 TCAACGTCCCTTTCATCGATCTCTCAAGCCAAGACTCAACTCTTGAAGCTCCTAGAGTCA 297
Query 304 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 357
Query 364 CACTAATAGCGGATGCTCACCGTTTGATGGAAAGTTTCTTCGACATGCCTCTCGCCGGCA 423
|||| ||| | || ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 358 CACTCATATCCGACGCTCACCGTTTAATGGAACGTTTCTTCGACATGCCTCTCGCCGGTA 417
Query 424 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGTTGTGGCTATGCAAGTAGCTTCACCGGCA 483
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 418 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGCTGTGGCTACGCAAGTAGCTTCACCGGTA 477
Query 484 GATTCTCCACTAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCCAACGATAATA 543
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 478 GATTCTCCACCAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCAAACGAGAATA 537
Query 544 GTGGCTCGAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGT 603
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGGCTCAAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGG 597
Query 604 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 657
Query 664 AGCTTCTGGGCTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCGAAGAGA 723
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AGCTTATGGGGTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCCAAGAGA 717
Query 724 ACGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGATCTCACGTTAG 783
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 718 ATGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGAGCTCACATTAG 777
Query 784 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 837
Query 844 GCCTTCAAGTCTTTGTCGACAATCAATGGCAATCCATTCGTCCCAATCCCAAGGCTTTCG 903
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 GCCTTCAAGTCTTTGTTGACAATCAATGGCAATCTATTCGTCCCAATCCCAAGGCTTTCG 897
Query 904 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGCTGTTTGC 963
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 898 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGTTGTTTGC 957
Query 964 ATAGAGCGGTTGTGAATAGAGAGAGCGCGAGAAAATCGATGGCGTTTTTCTTGTGTCCGA 1023
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 958 ATAGAGCGGTTGTGAATAGGGAAAGCGCGAGGAAATCGATGGCGTTTTTCTTGTGTCCGA 1017
Query 1024 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGAAAACAAGAAAAT 1083
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGACAACAAGAAAAT 1077
Query 1084 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACCGAGCAGATG 1143
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACAGAGCAGATG 1137
Query 1144 TGAATACTCTCGATTCCTTTTCGAATTGGGTTATTACCAACAACAATCCCATCTAAGAAA 1203
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1138 TGAATACTCTCGATTCCTTTTCAAATTGGGTCATTACCAACAAAAATCCCATCTAAGAAA 1197
Query 1204 CAAAATTAT 1212
||| |||||
Sbjct 1198 CAACATTAT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5