BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51810.1 Length=1400 Score E Sequences producing significant alignments: (Bits) Value Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1 1908 0.0 > Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1 Length=1273 Score = 1908 bits (1033), Expect = 0.0 Identities = 1152/1209 (95%), Gaps = 10/1209 (1%) Strand=Plus/Plus Query 11 AACAAGAcaaaacaaaaaccccaaaactctcaag----aaa-aaaaaaag--aaaagaaa 63 ||||| |||||| |||||||| |||||||||||| ||| |||||||| |||| ||| Sbjct 1 AACAAAACAAAAAAAAAACCCAAAAACTCTCAAGAAAAAAAGAAAAAAAGAAAAAAAAAA 60 Query 64 TGGCGATACTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 123 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGCGATATTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 120 Query 124 TTGAAAAAGACCAAACTTCTCCACTAATCTTTAACCCTTCTCTTCTTAACCTCCAATCCC 183 ||||||||||||||| ||||| ||||| |||| ||||| ||||| ||||||||||||| Sbjct 121 TTGAAAAAGACCAAA---CTCCATTAATCCTTAATCCTTCCCTTCTAAACCTCCAATCCC 177 Query 184 AAATCCCAAACCAATTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCAGAGC 243 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 178 AAATCCCAAACCAGTTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCCGAGC 237 Query 244 TCAACGTCCCGTTCATCGATCTCTCAAGCCAAGACTCGACTCTTGAAGCTCCTAGAGTCA 303 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 238 TCAACGTCCCTTTCATCGATCTCTCAAGCCAAGACTCAACTCTTGAAGCTCCTAGAGTCA 297 Query 304 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 357 Query 364 CACTAATAGCGGATGCTCACCGTTTGATGGAAAGTTTCTTCGACATGCCTCTCGCCGGCA 423 |||| ||| | || ||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 358 CACTCATATCCGACGCTCACCGTTTAATGGAACGTTTCTTCGACATGCCTCTCGCCGGTA 417 Query 424 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGTTGTGGCTATGCAAGTAGCTTCACCGGCA 483 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | Sbjct 418 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGCTGTGGCTACGCAAGTAGCTTCACCGGTA 477 Query 484 GATTCTCCACTAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCCAACGATAATA 543 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 478 GATTCTCCACCAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCAAACGAGAATA 537 Query 544 GTGGCTCGAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGT 603 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTGGCTCAAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGG 597 Query 604 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 657 Query 664 AGCTTCTGGGCTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCGAAGAGA 723 ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 658 AGCTTATGGGGTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCCAAGAGA 717 Query 724 ACGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGATCTCACGTTAG 783 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 718 ATGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGAGCTCACATTAG 777 Query 784 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 837 Query 844 GCCTTCAAGTCTTTGTCGACAATCAATGGCAATCCATTCGTCCCAATCCCAAGGCTTTCG 903 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 838 GCCTTCAAGTCTTTGTTGACAATCAATGGCAATCTATTCGTCCCAATCCCAAGGCTTTCG 897 Query 904 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGCTGTTTGC 963 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 898 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGTTGTTTGC 957 Query 964 ATAGAGCGGTTGTGAATAGAGAGAGCGCGAGAAAATCGATGGCGTTTTTCTTGTGTCCGA 1023 ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 958 ATAGAGCGGTTGTGAATAGGGAAAGCGCGAGGAAATCGATGGCGTTTTTCTTGTGTCCGA 1017 Query 1024 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGAAAACAAGAAAAT 1083 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1018 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGACAACAAGAAAAT 1077 Query 1084 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACCGAGCAGATG 1143 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1078 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACAGAGCAGATG 1137 Query 1144 TGAATACTCTCGATTCCTTTTCGAATTGGGTTATTACCAACAACAATCCCATCTAAGAAA 1203 |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 1138 TGAATACTCTCGATTCCTTTTCAAATTGGGTCATTACCAACAAAAATCCCATCTAAGAAA 1197 Query 1204 CAAAATTAT 1212 ||| ||||| Sbjct 1198 CAACATTAT 1206 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52335996630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5