BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51830.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949730 jgi|Araly1|949730|scaffold_801617.1 1692 0.0
Ahg917142 jgi|Araly1|917142|Al_scaffold_0008_1893 1282 0.0
> Ahg949730 jgi|Araly1|949730|scaffold_801617.1
Length=1072
Score = 1692 bits (916), Expect = 0.0
Identities = 1008/1053 (96%), Gaps = 3/1053 (0%)
Strand=Plus/Plus
Query 136 AAATGGGTGAGGATGCAATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 195
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AAATGGGTGAGAACGCCATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 78
Query 196 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCTACGGTGGGAG 255
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 79 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCAACGGTGGGAG 138
Query 256 GTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAATG 315
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 139 GTGTTTCACTAGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCAAATG 198
Query 316 TAGCTGTTGGTGTCTCTAGACTTGGTGGCTCCTCTGCTTTCATTGGAAAGGTTGGTGATG 375
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 199 TAGCTGTTGGTGTCTCTAGACTTGGTGGTTCGTCTGCTTTTATTGGAAAGGTTGGTGATG 258
Query 376 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGACAACTCTGGGA 435
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 259 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGATAACTCTGGGA 318
Query 436 TGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAGAGGTGATGGA 494
||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 319 TGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAGAGGTGATGGA 377
Query 495 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 437
Query 555 CTTGACAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CTTGATAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 497
Query 615 GAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGGCTGCAGGGAGT 674
|||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 498 GAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATCGCTAAATCCGCAGGGAGT 557
Query 675 CTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAGAAGCTGCTAGG 734
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 558 CTTTTATCTTATGATCCGAATTTGAGATTGCCATTGTGGCCATCAGAAGAAGCTGCAAGG 617
Query 735 AAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAAGACGAGATA 794
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 618 AAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAGGACGAGATT 677
Query 795 ACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 854
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ACATTCCTGACCGGTGGGGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 737
Query 855 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 797
Query 915 CAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 974
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 798 AAGGAGTTTAAAGGCAGAGTTGCTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 857
Query 975 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTACTCTTCTCAAG 1034
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 858 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATATCACTATTCTCAAG 917
Query 1035 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAGCCATTACAGTA 1094
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 918 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTCGCAAACGCTTGTGGAGCCATTACAGTA 977
Query 1095 ACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTTTCT 1154
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 978 ACAGAGAGAGGAGCAATTCCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTGACT 1037
Query 1155 TCTACTCGCTCCTAAAATGCTTCAAAA-GTCTC 1186
||| ||||||| ||||||||||||||| |||||
Sbjct 1038 TCTTCTCGCTCTTAAAATGCTTCAAAAAGTCTC 1070
> Ahg917142 jgi|Araly1|917142|Al_scaffold_0008_1893
Length=978
Score = 1282 bits (694), Expect = 0.0
Identities = 854/926 (92%), Gaps = 31/926 (3%)
Strand=Plus/Plus
Query 255 GGTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAAT 314
||||||||| | |||||| |||||||||||||||| ||||||||||||||||| || |||
Sbjct 73 GGTGTTTCACTAGCTGAAACACCAGCTTTCAAGAAGGCTCCTGGAGGAGCTCCCGCAAAT 132
Query 315 GTAGCTGTTGGTGTCTCT--A----G---ACTTGGTGGCTCCTCTGCTTTCATTGGAAAG 365
|||||||||||||||||| | | ||||||||| || ||||||||||||||||||
Sbjct 133 GTAGCTGTTGGTGTCTCTAGACTTGGACCACTTGGTGGTTCGTCTGCTTTCATTGGAAAG 192
Query 366 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGAC 425
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 193 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGAT 252
Query 426 AACTCTGGGATGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAG 484
||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||
Sbjct 253 AACTCTGGGATGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAG 311
Query 485 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 371
Query 545 GGAATCTGAGCTTGACAA-GAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 603
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 372 GGAATCTGAGCTTGATAAAGA-CCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 430
Query 604 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGG 663
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 431 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATTGCTAAAT 490
Query 664 CTGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 723
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 550
Query 724 AAGCTGCTAGGAAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 783
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAGCTGCAAGGAAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 610
Query 784 AAGACGAGATAACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGC 843
| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 611 AGGATGAGATTACATTCCTGACCGGTGGTGATGATCCCTATGATGATGATGTGGTGTTGC 670
Query 844 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTA 903
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 671 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCA-AAGGACCTAATGGCTG-A 728
Query 904 GATACTACACTCAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 963
| | | | | | | || ||||||||||||||||||||||||||||||||||
Sbjct 729 G-T--T----T-A--A----A--GGCAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 772
Query 964 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 773 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGAACTCA 832
Query 1024 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAG 1083
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 833 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTATATTCGCAAACGCTTGTGGAG 892
Query 1084 CCATTACAGTAACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAG 1143
||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||| |||
Sbjct 893 CCATTACGGTAACAGAGAGAGGAGCTATTCCGGCCATGCCCAGCATGGATGCTGTTGAAG 952
Query 1144 ATCTTCTTTCTTCTACTCGCTCCTAA 1169
||||||| |||||||||| ||||||
Sbjct 953 ATCTTCTGACTTCTACTCGTTCCTAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5