BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51830.1 Length=1454 Score E Sequences producing significant alignments: (Bits) Value Ahg949730 jgi|Araly1|949730|scaffold_801617.1 1692 0.0 Ahg917142 jgi|Araly1|917142|Al_scaffold_0008_1893 1282 0.0 > Ahg949730 jgi|Araly1|949730|scaffold_801617.1 Length=1072 Score = 1692 bits (916), Expect = 0.0 Identities = 1008/1053 (96%), Gaps = 3/1053 (0%) Strand=Plus/Plus Query 136 AAATGGGTGAGGATGCAATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 195 ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 AAATGGGTGAGAACGCCATCTCAGGTAATCTCAAGAATCTAACGATCGACACAAGAGATT 78 Query 196 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCTACGGTGGGAG 255 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 79 CAGAAACTCTTGTGGTATGTTTCGGTGAAATGTTGATTGATTTTGTTCCAACGGTGGGAG 138 Query 256 GTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAATG 315 |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 139 GTGTTTCACTAGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCAAATG 198 Query 316 TAGCTGTTGGTGTCTCTAGACTTGGTGGCTCCTCTGCTTTCATTGGAAAGGTTGGTGATG 375 |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct 199 TAGCTGTTGGTGTCTCTAGACTTGGTGGTTCGTCTGCTTTTATTGGAAAGGTTGGTGATG 258 Query 376 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGACAACTCTGGGA 435 ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 259 ATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGATAACTCTGGGA 318 Query 436 TGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAGAGGTGATGGA 494 ||||||||||||| ||||||||||||||| || || |||||||| ||||||||||||||| Sbjct 319 TGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAGAGGTGATGGA 377 Query 495 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 GAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTTGGAATCTGAG 437 Query 555 CTTGACAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 614 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 CTTGATAAGAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTATCAGTTTGATT 497 Query 615 GAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGGCTGCAGGGAGT 674 |||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| Sbjct 498 GAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATCGCTAAATCCGCAGGGAGT 557 Query 675 CTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAGAAGCTGCTAGG 734 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 558 CTTTTATCTTATGATCCGAATTTGAGATTGCCATTGTGGCCATCAGAAGAAGCTGCAAGG 617 Query 735 AAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAAGACGAGATA 794 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 618 AAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCGAGGACGAGATT 677 Query 795 ACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 854 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 678 ACATTCCTGACCGGTGGGGATGATCCTTATGATGATGATGTGGTGTTGCAAAAGCTCTTT 737 Query 855 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 CATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTAGATACTACACT 797 Query 915 CAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 974 ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 798 AAGGAGTTTAAAGGCAGAGTTGCTGGAGTAAAAGTGAAGCCAGTTGATACAACCGGTGCA 857 Query 975 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTACTCTTCTCAAG 1034 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| Sbjct 858 GGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATATCACTATTCTCAAG 917 Query 1035 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAGCCATTACAGTA 1094 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 918 GATGAGAAGAAACTAAGAGAGGCGCTTCTATTCGCAAACGCTTGTGGAGCCATTACAGTA 977 Query 1095 ACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTTTCT 1154 |||||||||||||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 978 ACAGAGAGAGGAGCAATTCCGGCGATGCCAAGCATGGATGCTGTTCAAGATCTTCTGACT 1037 Query 1155 TCTACTCGCTCCTAAAATGCTTCAAAA-GTCTC 1186 ||| ||||||| ||||||||||||||| ||||| Sbjct 1038 TCTTCTCGCTCTTAAAATGCTTCAAAAAGTCTC 1070 > Ahg917142 jgi|Araly1|917142|Al_scaffold_0008_1893 Length=978 Score = 1282 bits (694), Expect = 0.0 Identities = 854/926 (92%), Gaps = 31/926 (3%) Strand=Plus/Plus Query 255 GGTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAAT 314 ||||||||| | |||||| |||||||||||||||| ||||||||||||||||| || ||| Sbjct 73 GGTGTTTCACTAGCTGAAACACCAGCTTTCAAGAAGGCTCCTGGAGGAGCTCCCGCAAAT 132 Query 315 GTAGCTGTTGGTGTCTCT--A----G---ACTTGGTGGCTCCTCTGCTTTCATTGGAAAG 365 |||||||||||||||||| | | ||||||||| || |||||||||||||||||| Sbjct 133 GTAGCTGTTGGTGTCTCTAGACTTGGACCACTTGGTGGTTCGTCTGCTTTCATTGGAAAG 192 Query 366 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGAC 425 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 193 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGAT 252 Query 426 AACTCTGGGATGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAG 484 ||||||||||||||||||||||| ||||||||||||||| || || |||||||| ||||| Sbjct 253 AACTCTGGGATGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAG 311 Query 485 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 371 Query 545 GGAATCTGAGCTTGACAA-GAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 603 ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 372 GGAATCTGAGCTTGATAAAGA-CCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 430 Query 604 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGG 663 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 431 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATTGCTAAAT 490 Query 664 CTGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 723 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 CCGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 550 Query 724 AAGCTGCTAGGAAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 783 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 551 AAGCTGCAAGGAAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 610 Query 784 AAGACGAGATAACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGC 843 | || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 611 AGGATGAGATTACATTCCTGACCGGTGGTGATGATCCCTATGATGATGATGTGGTGTTGC 670 Query 844 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTA 903 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 671 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCA-AAGGACCTAATGGCTG-A 728 Query 904 GATACTACACTCAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 963 | | | | | | | || |||||||||||||||||||||||||||||||||| Sbjct 729 G-T--T----T-A--A----A--GGCAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 772 Query 964 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTA 1023 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 773 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGAACTCA 832 Query 1024 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAG 1083 |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct 833 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTATATTCGCAAACGCTTGTGGAG 892 Query 1084 CCATTACAGTAACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAG 1143 ||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||| ||| Sbjct 893 CCATTACGGTAACAGAGAGAGGAGCTATTCCGGCCATGCCCAGCATGGATGCTGTTGAAG 952 Query 1144 ATCTTCTTTCTTCTACTCGCTCCTAA 1169 ||||||| |||||||||| |||||| Sbjct 953 ATCTTCTGACTTCTACTCGTTCCTAA 978 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54392869860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5