BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51840.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495249 jgi|Araly1|495249|fgenesh2_kg.8__1065__AT5G51840.1 1341 0.0
Ahg331796 jgi|Araly1|331796|fgenesh1_pm.C_scaffold_8001139 508 3e-143
Ahg950104 jgi|Araly1|950104|scaffold_801991.1 147 3e-34
> Ahg495249 jgi|Araly1|495249|fgenesh2_kg.8__1065__AT5G51840.1
Length=1010
Score = 1341 bits (726), Expect = 0.0
Identities = 933/1027 (91%), Gaps = 37/1027 (4%)
Strand=Plus/Plus
Query 18 TCAAAATCAAAATCCGGGACGATAATTCTCGCACACG-T-TCTCCATCACTTTCCCTCGA 75
||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||
Sbjct 1 TCAAAATCAAAATCCGGGACGATAATTCT----CACGTTCTCTCCATCACCTTCCCTCGA 56
Query 76 TCC-AA--A-A-C-CAGAGTGGGAACTACACGCGAATCGA--ATCAT-A--A-----ATG 119
||| || | | | ||||||||| ||||||||||||| | ||||| | | | |
Sbjct 57 TCCAAACCAGAGCGAAGAGTGGGAGCTACACGCGAATC-ATCATCATCATCATCTCTACG 115
Query 120 GAATGTGAATTTTGAAATCGAGGAAGAAGACGAAATCGGAGCATTATTGGATTGAGTTTT 179
||||||||||||||| |||||||||||| ||||||||||||||| |||||| || ||||
Sbjct 116 TAATGTGAATTTTGAATTCGAGGAAGAAGGCGAAATCGGAGCATTGTTGGATCGAATTTT 175
Query 180 GAAGTTTTTAGGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAG 239
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAAG--TTT-GGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAG 232
Query 240 CCGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 233 CCGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAAGAAG 292
Query 300 AGCAAGTTCAGCTGAGGAAATACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAA 359
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 293 AGCAAGTTCAGTTGAGGAAATATATTGAGGAGAACTATACAAAGATTAGGGATGTTGAAA 352
Query 360 GGGAATTTGGAAACCTTTCAATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAA 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 GGGAATTTGGAAACCTTTCAATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCAA 412
Query 420 TGGAACACTTGAGAAAGAAAATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGA 479
||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 413 TGGAACACTTGCGAAAGAAAATCGAAGTCGCAACTGAAAAGATCCATGTTGCTAAGTTGA 472
Query 480 AAGAAGAAGAAGCGCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTGAAGGATGAAGAAG 539
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 473 AAGAAGAAGAAGCTCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTAAAGGATGAAGAAG 532
Query 540 CAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAAAGCAGCAATACGC 599
|| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 533 CAGCAAAACAGAGTCTTTGTGATGATTTAAACCGTCTGGTACAACAAAGCAGCAATACGC 592
Query 600 AGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAATCCAAATCGATCAT 659
|||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||
Sbjct 593 AGTACGCCAGACTTGAGGAATTAAAAAGAAGATTAGAAGCGCTGAATCCAAATAGATCAT 652
Query 660 CTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTAGACAGCGCACCAG 719
|||||||| |||||||||| ||||||||||||| ||||||||||||||||| | ||||||
Sbjct 653 CTACTTCTGTTCAGCAAGTCCAAGAACCGGAGATTAAATCTGTAGTAGACAACTCACCAG 712
Query 720 CAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCACGGGAACGAGGAAG 779
|||||||||| || || |||||| ||| |||||| || | ||||| ||||| |
Sbjct 713 CAGCCAATGCTAATCAGACTCACACGGAAAAACCAGA---T------GGGAAGGAGGAGG 763
Query 780 GTGGTAAAGAACATGGACAGAGACCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGA 839
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 764 GAGGTAAAGAACATGGACAGAGGCCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGA 823
Query 840 AACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAATGAACAAAGGCAGAGGAGGTT 899
|||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 824 AACCACAGAATCAAGGAAAGGGAAGAGGAGTTGGAATCATGAACAAAGGCAGAGGAGGTT 883
Query 900 GGACAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAGATACATATATCTAG-ATAATC 958
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 884 GGACAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGATACACATATCTATTATAATA 943
Query 959 CATATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAGGTAT 1017
|||||||||||||| | | |||| ||||||||||||||||||||| |||||||||||||
Sbjct 944 CATATACCGAAAGCTGCCTTTTCAAATCAGAAGTATGTCAAATATTTTGTTACCAGGTAC 1003
Query 1018 GTTCTAT 1024
|||||||
Sbjct 1004 GTTCTAT 1010
> Ahg331796 jgi|Araly1|331796|fgenesh1_pm.C_scaffold_8001139
Length=660
Score = 508 bits (275), Expect = 3e-143
Identities = 335/363 (92%), Gaps = 8/363 (2%)
Strand=Plus/Plus
Query 527 AAGGATGAAGAAGCAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAA 586
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 AAGGATGAAGAAGCAGCAAAACAGAGTCTTTGCGAAGATTTAAACCGTCTGGTACAACAA 357
Query 587 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAAT 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGCTGAAT 417
Query 647 CCAAATCGATCATCTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTA 706
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CCAAATAGATCATCTACTTCTATTCAGCAAGTCCAAGAACCGGAGACTAAATCTGTAGTA 477
Query 707 GACAGCGCACCAGCAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCAC 766
|||||| |||||||||||||||| || | ||||||||||||||||| |||||||||||
Sbjct 478 GACAGCTCACCAGCAGCCAATGCTAATGAGACTCACCCGGGAAAACCAGAAAATAACCAT 537
Query 767 GGGAACGAGGAAGGTGGTAAAGAACATGGACAGAG---A-C--CAG-C-AACAGCTGAAG 818
||||||||||| || || |||||||||||| |||| | | ||| | |||||||||||
Sbjct 538 GGGAACGAGGAGGGAGGCAAAGAACATGGAAAGAGGCCAGCAACAGGCCAACAGCTGAAG 597
Query 819 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAA 878
||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 598 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGAAAGGGAAGAGGAATTGGAGTCA 657
Query 879 TGA 881
|||
Sbjct 658 TGA 660
Score = 484 bits (262), Expect = 5e-136
Identities = 302/321 (94%), Gaps = 3/321 (1%)
Strand=Plus/Plus
Query 200 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 60
Query 260 GCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAGAGCAAGTTCAGCTGAGGAAA 319
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 61 GCTCCTGTTATTGCTTACACAGAGAAGATCATTGAGGAAGAGCAAGTTCAATTGAGGAAA 120
Query 320 TACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAAGGGAATTTGGAAACCTTTCA 379
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 121 TACATTGAGGAGAACTATACAAAAATCAGGGATGTCGAAAGGGAATTTGGAAACCTCACA 180
Query 380 ATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAATGGAACACTTGAGAAAGAAA 439
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCGATGGAACACTTGAGAAAGAAA 240
Query 440 ATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGAAAGAAGAAGAAGCGCGAAAG 499
|| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 241 ATTGAAATCTCAACTGAAAGGATCCATGTTGCTAAGTTGGAAGAAGAAGAAGCGCGAAAG 300
Query 500 GCATTTGAAGCAGCATCAAAA 520
| || |||| |||| |||||
Sbjct 301 G-AT--GAAGAAGCAGCAAAA 318
> Ahg950104 jgi|Araly1|950104|scaffold_801991.1
Length=582
Score = 147 bits (79), Expect = 3e-34
Identities = 102/113 (90%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 903 CAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAG-ATACATATATCTAGATAATCCAT 961
|||||||||||||||||||||||||||||| ||||| |||||||||| || ||||| |||
Sbjct 1 CAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGGATACATATATATATATAATGCAT 60
Query 962 ATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAG 1013
||||||||||| | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 61 ATACCGAAAGCCGCCTTTTCGAATCAGAAGTGTGTCAAATATATTACTACCAG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5