BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51840.1 Length=1244 Score E Sequences producing significant alignments: (Bits) Value Ahg495249 jgi|Araly1|495249|fgenesh2_kg.8__1065__AT5G51840.1 1341 0.0 Ahg331796 jgi|Araly1|331796|fgenesh1_pm.C_scaffold_8001139 508 3e-143 Ahg950104 jgi|Araly1|950104|scaffold_801991.1 147 3e-34 > Ahg495249 jgi|Araly1|495249|fgenesh2_kg.8__1065__AT5G51840.1 Length=1010 Score = 1341 bits (726), Expect = 0.0 Identities = 933/1027 (91%), Gaps = 37/1027 (4%) Strand=Plus/Plus Query 18 TCAAAATCAAAATCCGGGACGATAATTCTCGCACACG-T-TCTCCATCACTTTCCCTCGA 75 ||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||| Sbjct 1 TCAAAATCAAAATCCGGGACGATAATTCT----CACGTTCTCTCCATCACCTTCCCTCGA 56 Query 76 TCC-AA--A-A-C-CAGAGTGGGAACTACACGCGAATCGA--ATCAT-A--A-----ATG 119 ||| || | | | ||||||||| ||||||||||||| | ||||| | | | | Sbjct 57 TCCAAACCAGAGCGAAGAGTGGGAGCTACACGCGAATC-ATCATCATCATCATCTCTACG 115 Query 120 GAATGTGAATTTTGAAATCGAGGAAGAAGACGAAATCGGAGCATTATTGGATTGAGTTTT 179 ||||||||||||||| |||||||||||| ||||||||||||||| |||||| || |||| Sbjct 116 TAATGTGAATTTTGAATTCGAGGAAGAAGGCGAAATCGGAGCATTGTTGGATCGAATTTT 175 Query 180 GAAGTTTTTAGGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAG 239 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 GAAG--TTT-GGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAG 232 Query 240 CCGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAG 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 233 CCGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAAGAAG 292 Query 300 AGCAAGTTCAGCTGAGGAAATACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAA 359 ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 293 AGCAAGTTCAGTTGAGGAAATATATTGAGGAGAACTATACAAAGATTAGGGATGTTGAAA 352 Query 360 GGGAATTTGGAAACCTTTCAATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAA 419 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 353 GGGAATTTGGAAACCTTTCAATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCAA 412 Query 420 TGGAACACTTGAGAAAGAAAATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGA 479 ||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct 413 TGGAACACTTGCGAAAGAAAATCGAAGTCGCAACTGAAAAGATCCATGTTGCTAAGTTGA 472 Query 480 AAGAAGAAGAAGCGCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTGAAGGATGAAGAAG 539 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 473 AAGAAGAAGAAGCTCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTAAAGGATGAAGAAG 532 Query 540 CAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAAAGCAGCAATACGC 599 || |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct 533 CAGCAAAACAGAGTCTTTGTGATGATTTAAACCGTCTGGTACAACAAAGCAGCAATACGC 592 Query 600 AGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAATCCAAATCGATCAT 659 |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| Sbjct 593 AGTACGCCAGACTTGAGGAATTAAAAAGAAGATTAGAAGCGCTGAATCCAAATAGATCAT 652 Query 660 CTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTAGACAGCGCACCAG 719 |||||||| |||||||||| ||||||||||||| ||||||||||||||||| | |||||| Sbjct 653 CTACTTCTGTTCAGCAAGTCCAAGAACCGGAGATTAAATCTGTAGTAGACAACTCACCAG 712 Query 720 CAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCACGGGAACGAGGAAG 779 |||||||||| || || |||||| ||| |||||| || | ||||| ||||| | Sbjct 713 CAGCCAATGCTAATCAGACTCACACGGAAAAACCAGA---T------GGGAAGGAGGAGG 763 Query 780 GTGGTAAAGAACATGGACAGAGACCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGA 839 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 764 GAGGTAAAGAACATGGACAGAGGCCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGA 823 Query 840 AACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAATGAACAAAGGCAGAGGAGGTT 899 |||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||| Sbjct 824 AACCACAGAATCAAGGAAAGGGAAGAGGAGTTGGAATCATGAACAAAGGCAGAGGAGGTT 883 Query 900 GGACAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAGATACATATATCTAG-ATAATC 958 ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| Sbjct 884 GGACAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGATACACATATCTATTATAATA 943 Query 959 CATATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAGGTAT 1017 |||||||||||||| | | |||| ||||||||||||||||||||| ||||||||||||| Sbjct 944 CATATACCGAAAGCTGCCTTTTCAAATCAGAAGTATGTCAAATATTTTGTTACCAGGTAC 1003 Query 1018 GTTCTAT 1024 ||||||| Sbjct 1004 GTTCTAT 1010 > Ahg331796 jgi|Araly1|331796|fgenesh1_pm.C_scaffold_8001139 Length=660 Score = 508 bits (275), Expect = 3e-143 Identities = 335/363 (92%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 527 AAGGATGAAGAAGCAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAA 586 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 298 AAGGATGAAGAAGCAGCAAAACAGAGTCTTTGCGAAGATTTAAACCGTCTGGTACAACAA 357 Query 587 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAAT 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 358 AGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGCTGAAT 417 Query 647 CCAAATCGATCATCTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTA 706 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 418 CCAAATAGATCATCTACTTCTATTCAGCAAGTCCAAGAACCGGAGACTAAATCTGTAGTA 477 Query 707 GACAGCGCACCAGCAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCAC 766 |||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||| Sbjct 478 GACAGCTCACCAGCAGCCAATGCTAATGAGACTCACCCGGGAAAACCAGAAAATAACCAT 537 Query 767 GGGAACGAGGAAGGTGGTAAAGAACATGGACAGAG---A-C--CAG-C-AACAGCTGAAG 818 ||||||||||| || || |||||||||||| |||| | | ||| | ||||||||||| Sbjct 538 GGGAACGAGGAGGGAGGCAAAGAACATGGAAAGAGGCCAGCAACAGGCCAACAGCTGAAG 597 Query 819 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAA 878 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | | Sbjct 598 GAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGAAAGGGAAGAGGAATTGGAGTCA 657 Query 879 TGA 881 ||| Sbjct 658 TGA 660 Score = 484 bits (262), Expect = 5e-136 Identities = 302/321 (94%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 200 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAA 60 Query 260 GCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAGAGCAAGTTCAGCTGAGGAAA 319 ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 61 GCTCCTGTTATTGCTTACACAGAGAAGATCATTGAGGAAGAGCAAGTTCAATTGAGGAAA 120 Query 320 TACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAAGGGAATTTGGAAACCTTTCA 379 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 121 TACATTGAGGAGAACTATACAAAAATCAGGGATGTCGAAAGGGAATTTGGAAACCTCACA 180 Query 380 ATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAATGGAACACTTGAGAAAGAAA 439 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 ATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCGATGGAACACTTGAGAAAGAAA 240 Query 440 ATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGAAAGAAGAAGAAGCGCGAAAG 499 || ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 241 ATTGAAATCTCAACTGAAAGGATCCATGTTGCTAAGTTGGAAGAAGAAGAAGCGCGAAAG 300 Query 500 GCATTTGAAGCAGCATCAAAA 520 | || |||| |||| ||||| Sbjct 301 G-AT--GAAGAAGCAGCAAAA 318 > Ahg950104 jgi|Araly1|950104|scaffold_801991.1 Length=582 Score = 147 bits (79), Expect = 3e-34 Identities = 102/113 (90%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 903 CAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAG-ATACATATATCTAGATAATCCAT 961 |||||||||||||||||||||||||||||| ||||| |||||||||| || ||||| ||| Sbjct 1 CAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGGATACATATATATATATAATGCAT 60 Query 962 ATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAG 1013 ||||||||||| | | ||||||||||||||| ||||||||||||| |||||| Sbjct 61 ATACCGAAAGCCGCCTTTTCGAATCAGAAGTGTGTCAAATATATTACTACCAG 113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46471835823 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5