BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51845.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331561 jgi|Araly1|331561|fgenesh1_pm.C_scaffold_8000904           357    2e-98


> Ahg331561 jgi|Araly1|331561|fgenesh1_pm.C_scaffold_8000904
Length=225

 Score =  357 bits (193),  Expect = 2e-98
 Identities = 215/225 (96%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  1    ATGATGTCTTCGAAGTCTCATTTTGTTGCTCTTCTCTTGATCA-T-TTT-TCTCATTGTT  57
            |||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||
Sbjct  1    ATGATGTCTTCGAAGTGTCATTTTGTTGCTCTTCTCTTGATCACTATTTCTCTCATTGTT  60

Query  58   AATGTTCAATCTACTCGGATTATGGATGATTCAAGCGATTGTGTATTCAAAGGACCATGT  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AATGTTCAATCTACTCGGATTATGGATGATTCAAGCGATTGTGTATTCAAAGGACCATGT  120

Query  118  CAAAGGAGGTCAGATTGTTACGAAAGGTGTGGATTGAAACCACCTTCTAGAGCTGCTTTG  177
            ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct  121  CAAAGGAGGTCAGATTGTTACAAAAGGTGTGGAGTGAAACCACCTTCTAGAACTGCTTTG  180

Query  178  TGTCAACCTATGGGACTCCAAGGCCGTGTATGTTGTTGTCTCTAA  222
            |||||||||||||||||||| || | |||||||||||||||||||
Sbjct  181  TGTCAACCTATGGGACTCCACGGACTTGTATGTTGTTGTCTCTAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5