BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51850.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916806 jgi|Araly1|916806|Al_scaffold_0008_1557 2185 0.0
> Ahg916806 jgi|Araly1|916806|Al_scaffold_0008_1557
Length=1791
Score = 2185 bits (1183), Expect = 0.0
Identities = 1607/1799 (89%), Gaps = 80/1799 (4%)
Strand=Plus/Plus
Query 168 ATGGGAAGAGACTGCGGCATGTTCGATGACGGCCATGGCAGTGAAGGTGGTGGCCGCGGT 227
||||||||||||||| |||| ||||||||||| | | | |||||||||||||||
Sbjct 1 ATGGGAAGAGACTGCCGCATATTCGATGACGG---T--C----ACGGTGGTGGCCGCGGT 51
Query 228 GGAGCCTTCTCTTCCTCAAGGTCAAAGAAAACAGCAAATGGATGCATGGCTGCTTTTTAC 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 52 GGAGCCTTCTCTTCCTCAAGGTCAAAGAAAACAGCAAATGGATGCATGGCTGCTTTTTTC 111
Query 288 CACTTATTTG---------A---TT-C--TCA---TCATCAT---CTCACCATTGATTCT 326
|||||||||| | || | ||| ||||||| |||||||||||||||
Sbjct 112 CACTTATTTGATTTTCAACATTTTTACTTTCACTCTCATCATCACCTCACCATTGATTCT 171
Query 327 CCTTCAAGGTCAAAAGGCTTGAAGTTGATGGAAGAGTCTCTACCATCAACAACCTACAAA 386
|||||||| || ||||||||||||||||| |||||| |||| ||||||||||| ||||||
Sbjct 172 CCTTCAAGTTCTAAAGGCTTGAAGTTGATAGAAGAGACTCTGCCATCAACAACTTACAAA 231
Query 387 GACAAAGAAA-TTTCGAACATTCCAGTAGGCATGAGAGTGAAAACAGATACAGGGACAAA 445
|||||| ||| ||| ||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 232 GACAAACAAAGTTT-GAACATTCCAGTAAGCATGAGAGTGAGAACAGAGACAGGGACAAA 290
Query 446 GAGTTCAAGACTCAGAGCTCTTGTGACTGATAGTTCCACTTCTTCATCTGAAATCTGTAA 505
||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||
Sbjct 291 GAGTTCAAGACTCAGAGCTCTAGCGACTGATACTTCAACTTCTTCATCTGAAATCTGTAA 350
Query 506 CTCACCAGGAAGCAAAACACCAAACTTGGTGGCTAGACTAATGGGTCTTGATCTTCTTCC 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTCACCAGGAAGCAAAACACCAAACTTGGTGGCTAGACTAATGGGTCTTGATCTTCTTCC 410
Query 566 TGATAAAACTGACCTTAACCATTCACTGTCAGATCTTCATACCATGTCAAGTCATCATAT 625
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 TGACAAAACTGACCTAAACCATTCACTGTCAGATCTTCATACAATGTCAAGTCATCATAT 470
Query 626 CACAAGCCATAGACTTTCCAAGAAAGGCACACGATCTTTACCGGTTAGCCCTAGAATCTC 685
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 471 CACAAGCCATAGACTTTCCAAGAAAGGCACACGATCTTTACCGGTGAGCCCTAGAATCTC 530
Query 686 CTCTGCTCGGAAATCTGATTTCGACATTCATCGCCTCTCTCTTCAGCTGAACAGAGAAAA 745
||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 531 CTCTGCTCGGAAATCGGATTTCGACATTCATCGCCTCTCTCTTCAGCTAAACAAAGAGAA 590
Query 746 AGAGTTTGGGCGTTCAAGGCTGAAAGAAGACCAAGAGGAGAGTC--------A--C--AG 793
||||||||| |||||| ||||||| |||| ||||||||||||| | | ||
Sbjct 591 AGAGTTTGGATGTTCAAAGCTGAAACAAGATCAAGAGGAGAGTCAAGAGGAGATTCATAG 650
Query 794 TCCAAGAGATTACGCGAGGCAGATAGTTAAACAAATCAAAGAGAGAGTCGTCACAAGAAG 853
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 651 TCCGAGAGATTACGCGAGGCAGATAGTTAAACAAATCAAAGAGAGAGTCGTCACTAGAAG 710
Query 854 AGTCGTCGGTATGGATATAACAAACTCGGTGAAAAACAGAGAAGCAAGACCATCACACGA 913
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 711 AGTCGTCGGTATGGATATAACAAACTCGGTGAAGAACAGAGAAGCAAGACCATCACATGA 770
Query 914 GCTTAGAAGAGACACAACAGTTTCTTGTTCACCAAGAACTAGGTTTTCAGAGAAAGAGAA 973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 771 GCTTAGAAGAGACACAACAGTTTCTTGTTCACCAAGAACTAGGTTTTCAGATAAAGAGAA 830
Query 974 CAAACAAAGCACCAGTCATAAACCTAATTCATCATCTTCTTCCAGACCAGAACCGATCAT 1033
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 831 CAAACCAAGCACCAGTCACAAACCTAATTCCTCATCTTCTTCCAGACCAGAACCGATCGT 890
Query 1034 TCAGAAGCCAAAGCCAAC-AC--C-A-----G--TGA-T-T-------CT-TGGAGAGAA 1072
|||||||||||||||||| || | | | | | | | || |||||||||
Sbjct 891 TCAGAAGCCAAAGCCAACAACAGCAATTCTTGATTCAGTGTCAAAAGCCTCTGGAGAGAA 950
Query 1073 ACAGAGCCAGAACAGAGTAAAACAAAGGCAACTAAAACCCATCAACCTGTGCAAGAAGGC 1132
||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 951 ACAGAGCAAGGACAGAGTAAAACAAAGGCAACTAAAACCAATCAACCTATGCAAGAAGGC 1010
Query 1133 AGAGACTGAAACAAGACGTCCCATAAAGCCTTCTCCAACATCAGATATTCGAAACAGGAA 1192
||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1011 AGAGAGTGAAACAAAACGTCCCATAAACCCTTCTCCTACATCAGATATTCGAAACAGGAA 1070
Query 1193 GCGAGAGACTTTCTTGTCTGATTCTAGAGACGTGAAAGCCAAGCCTTTACACAAGATCAA 1252
||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1071 GCGAGAGGCTTTCTTGTCTGAATCGAGAGACGTGAAAGCCAAGCCTTTACACAAG---AA 1127
Query 1253 GAAGTTTAAGAAGATACCAAAGTCAAATGATCTTGAAAACATCTCTGCCACAAGACCTCC 1312
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GAAGTTCAAGAAAATACCAAAGTCAAATGATCTTGAAAACATCTCTGCCACAAGACCTCC 1187
Query 1313 TCATCAACAGATTAACGAAAGAGAGCGACTAATATCGAATGAAGCAGCATCGATACGCTC 1372
|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 1188 TCATAAACAGATTAACGAAAGAGATCGACTAATATCGAATGAAGTAGCATCGATTCGCTC 1247
Query 1373 TAGTTCGATGCACAAAACCGAGAAGAATAGTCCACAAGTAGCGAGGAATCACAAATTCGA 1432
||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 1248 TAGTTTGATGCACAAAATCGAGAAGACTAGTCCACAAGTAGCGAGGAATCAAAAATTAGA 1307
Query 1433 CGATGCAGCCACTGAAATCAATTCTGAACAAGACTATATCATAAGAATAATGAATCTTGC 1492
|||||| ||||||| |||| |||||||||||||||| |||| ||||||| |||||||||
Sbjct 1308 CGATGCTGCCACTGGAATCGATTCTGAACAAGACTACATCACAAGAATATTGAATCTTGT 1367
Query 1493 GGGAATCAAGAGTGAC---TCA-CAAGCAATGCTCGATCTTTCGATTTTCCGCAAACTAG 1548
||||||||||| |||| ||| ||| ||||||| |||| ||||||||||| |||||| |
Sbjct 1368 GGGAATCAAGAATGACACATCAACAA-CAATGCTAGATCCTTCGATTTTCCACAAACTGG 1426
Query 1549 AGCATTTTGGAGATTATCCATCAGGAACATTGGCTCTAG-GATGCAATCGTAGGCTATTG 1607
|||| |||||||||||||||||||||| ||||| | | | |||||||||| | |||| ||
Sbjct 1427 AGCAGTTTGGAGATTATCCATCAGGAAGATTGGTTTT-GCGATGCAATCGGAAGCTACTG 1485
Query 1608 TTCGATCTAGTGAACGAGATTCTGATTGAAACCGTGGCGAAACGACGCGGAAACTATCAG 1667
|| ||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |
Sbjct 1486 TTTGATCTAGTGAACGAGGTTCTGATTGAAAACGTGGCGAAAAAACGCGAAAACTATCCG 1545
Query 1668 GGATCGGAGCTAATCAGCGAGCTCTGTTCCGCTGTAGCGAGATATAGTACTAAGTGTTAT 1727
||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
Sbjct 1546 GGACCGGAGCTAATCAGCGAGCTTTGTTCCGCTGTTCCGAGATATAGTAGTAAGTGTTGT 1605
Query 1728 CCAGTTCCTGAAGAGATTGCTTTAGTAGACGTGAAACGTCTTCTagagaagaagaagaag 1787
|| |||||||||||| ||||||| | |||||||||| |||| ||||||||||||||
Sbjct 1606 CCCCTTCCTGAAGAGACTGCTTTAATGGACGTGAAACATCTTGTAGAGAAGAAGAAG--- 1662
Query 1788 cttgaagaggaaggagaagagaTCATCGTAGAGATTGAGCGGGAGATCATAGACGCGCTT 1847
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 1663 CTTGAAGAGGAAGGAGAAGAGATCATTGCAGAGATTGAGCGGGAGATCATAGACAAGCTC 1722
Query 1848 GTGCGAGAAACTTTGTCCGAATTAAGTCTTAACAAGAGATCAAA-CAAAACGACGTCGG 1905
||||||||||||| ||| ||||| ||||||||| ||||| | || ||||||||||||||
Sbjct 1723 GTGCGAGAAACTTGGTCTGAATTGAGTCTTAACCAGAGA-CTAAGCAAAACGACGTCGG 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5