BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51860.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949734 jgi|Araly1|949734|scaffold_801621.1 821 0.0
Ahg916807 jgi|Araly1|916807|Al_scaffold_0008_1558 339 2e-92
> Ahg949734 jgi|Araly1|949734|scaffold_801621.1
Length=637
Score = 821 bits (444), Expect = 0.0
Identities = 499/526 (95%), Gaps = 2/526 (0%)
Strand=Plus/Plus
Query 128 TTTTCTTGGAAGTAACTGAAATGGTGAGAGGAAAGATCGAAATCAAGAAGATTGAGAACG 187
|||| | |||| | | ||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1 TTTTGTAGGAATTCATTGAAATGGTGAGAGGAAAGATTGAGATCAAGAAGATCGAGAACG 60
Query 188 TGACAAGTAGACAAGTCACGTTTTCGAAGCGAAGGAGTGGTCTCTTTAAGAAGGCTCATG 247
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 61 TAACAAGTAGACAAGTCACGTTTTCCAAACGAAGGAGTGGTCTCTTTAAGAAGGCTCATG 120
Query 248 AGCTTTCTGTTCTATGTGATGCTCAAGTGGCAGCTATGATCTTCTCTCAGAAAGGAAGAT 307
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 121 AGCTTTCTGTTCTATGTGATGCTCAAGTCGCAGCAATGATCTTCTCTCAGAAAGGAAGAT 180
Query 308 TATATGAATTCGCTAGCTCCGATATCAGGAACACGATAAAGCGATACGCTGAGTACAAGA 367
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 181 TATATGAATTCGCTAGCTCCGATATCAGGAATATGATCAAGCGATACGCTGAGTACAAGA 240
Query 368 GAGAGTATTTTGTTGCAGAAACTCATCCTATAGAGCAATACGTGCAGGGGCTAAAGAAGG 427
| ||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 241 GGGAGTACTTTGTTGCAGAAGCACATCCTATAGAGCAATATGTGCAGGGGCTAAAGAAGG 300
Query 428 AAATGGTGACAATGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGG 487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAATGGTGACAACGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGG 360
Query 488 GACAAAGTTTGGATTCTTGTTCGGTAAAAGAACTTTCAG-AGATAGCCACACAGATAGAG 546
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 361 GACAAAGTTTGGCTTCTTGTTCGGTAAAAGAACTT-CAGGAGATAGCCACACAGATAGAG 419
Query 547 AAAAGCCTTCATATGGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCTACAGAAA 606
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 AAAAGCCTTCATATTGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCTAGAGAAA 479
Query 607 CTAAAAGCCAAGGAGAGGGAACTCAAGGACGAGAGAGTCAGGCTTT 652
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTAAAAGCCAAGGAGAGGGAACTCAAGGACGAGAGAGTCAGGCTTT 525
> Ahg916807 jgi|Araly1|916807|Al_scaffold_0008_1558
Length=600
Score = 339 bits (183), Expect = 2e-92
Identities = 402/506 (79%), Gaps = 22/506 (4%)
Strand=Plus/Plus
Query 148 ATGGTGAGAGGAAAGATCGAAATCAAGAAGATTGAGAACGTGACAAGTAGACAAGTCACG 207
||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGGTGAGAGGGAAGATTGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 60
Query 208 TTTTCGAAGCGAAGGAGTGGTCTCTTTAAGAAGGCTCATGAGCTTTCTGTTCTATGTGAT 267
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 61 TTTTCGAAGCGAAGGAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 120
Query 268 GCTCAAGTGGCAGCTAT-GATCTTCTCTCAGAAAGGAAGATTATATGAATTCGCTAGCTC 326
|| ||||| || || || | |||||||||||| ||||||||| | |||| | |||||||
Sbjct 121 GCACAAGTCGCCGCCATTG-TCTTCTCTCAGAGTGGAAGATTACACGAATACTCTAGCTC 179
Query 327 CGATATC-AGGAACACGATA-AAGCGATACG-CTGAGTACAAGAGAGAGTATT-T-TGTT 381
||| || || || | ||| || |||| | | ||| | || | | || | |||
Sbjct 180 CGAGATGGAG-AAGATTATAGAAA-GATATGACA-AGTTTACGA-AT-GCCTTGTATGTG 234
Query 382 GCAGAAACTCATCCTA-TAGAGCAATACGTGCAGGGGCTAAAGAAGGAAATGG-TGACAA 439
||||| | | || | |||| | |||| |||||| ||| |||| ||||||| | | ||
Sbjct 235 GCAGAGAGGCC-CCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAATGAAT-AGAA 292
Query 440 TGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGGGACAAAGTTTGG 499
||||||| |||||||| | |||||||| ||| |||| ||| || |||| ||| ||||||
Sbjct 293 TGGTGAAGAAGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGG 352
Query 500 ATTCTTGTTCGGTAAAAGAACTTTCA-GAGATAGCCACACAGATAGAGAAAAGCCTTCAT 558
|||| ||||| || | ||||||| || ||||||| ||| || || ||||||||||||| |
Sbjct 353 ATTCGTGTTCAGTGACAGAACTT-CAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGT 411
Query 559 ATGGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCT-ACAGAAA-CTAAAAGCCA 616
|| || || | ||||||||| ||||||||| |||| | || | | ||| ||||||| |
Sbjct 412 ATTGTCAGGTCCAGAAAGGCTGAGTTATATGCAGATCAACTGA-A-AAAGCTAAAAGAAA 469
Query 617 AGGAGAGGGAACTCAAGGACGAGAGA 642
|||||||||| ||| | ||||||||
Sbjct 470 AGGAGAGGGAGCTCTTGAACGAGAGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5