BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51870.3
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916807 jgi|Araly1|916807|Al_scaffold_0008_1558 826 0.0
Ahg952332 jgi|Araly1|952332|scaffold_60400001.1 758 0.0
> Ahg916807 jgi|Araly1|916807|Al_scaffold_0008_1558
Length=600
Score = 826 bits (447), Expect = 0.0
Identities = 493/515 (96%), Gaps = 4/515 (1%)
Strand=Plus/Plus
Query 82 ATGGTGAGAGGGAAGATCGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 141
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGAGGGAAGATTGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 60
Query 142 TTCTCGAAGCGAAGAAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 201
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCGAAGCGAAGGAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 120
Query 202 GCTCAAGTAGCCGCCATTGTCTTTTCTCAGAGCGGAAGATTACACGAATACTCTAGCTCC 261
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 GCACAAGTCGCCGCCATTGTCTTCTCTCAGAGTGGAAGATTACACGAATACTCTAGCTCC 180
Query 262 CAGATGGAGAAGATTATAGATAGATATGGCAAGTTTA-GTAATGCCTTCTATGTGGCAGA 320
||||||||||||||||||| ||||||| |||||||| | |||||||| |||||||||||
Sbjct 181 GAGATGGAGAAGATTATAGAAAGATATGACAAGTTTACG-AATGCCTTGTATGTGGCAGA 239
Query 321 GAGGCCTCAAGTAGAACGATACTTGCAGGAGCTGAAGATGGAAATTG-ATAGAATGGTGA 379
|||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 240 GAGGCCCCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAA-TGAATAGAATGGTGA 298
Query 380 AAAAGATTGATCTCCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGT 439
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGAAGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGT 358
Query 440 GTTCAGTGACAGAACTTCAAGAGATTGACACTCAAATTGAGAAAAGCCTTCGTATTGTCA 499
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GTTCAGTGACAGAACTTCAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGTATTGTCA 418
Query 500 GGTCAAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGG 559
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTCCAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGG 478
Query 560 AGCTCTTGAACGAGAGAAAAAGGCTGCTTGAAGAG 594
||||||||||||||||||||||||||| |||||||
Sbjct 479 AGCTCTTGAACGAGAGAAAAAGGCTGCGTGAAGAG 513
Score = 137 bits (74), Expect = 1e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 653 AGGGTAATACTGAAGGTGGTCACAGAACCAAACATTCATCAGAGGTTGAAACCGACCTAT 712
||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 512 AGGGTAAAACTGAAGGTGGTTGCAGTACCAAACATTCATCAGAGGTTGAAACCGACCTAT 571
Query 713 TTATCGGATTGCCCGTGACTCGGCTATAA 741
|||| ||||||||||||||||||||||||
Sbjct 572 TTATTGGATTGCCCGTGACTCGGCTATAA 600
> Ahg952332 jgi|Araly1|952332|scaffold_60400001.1
Length=521
Score = 758 bits (410), Expect = 0.0
Identities = 470/499 (94%), Gaps = 3/499 (1%)
Strand=Plus/Plus
Query 264 GATGGAGAAGATTATAGATAGATATGGCAAGTTTAGTAATGCCTTCTATGTGGCAGAGAG 323
|||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 24 GATGGAGAAGATTATAGAAAGATATGAAAAGTTTACTAATGCCTTGTATGTGGCAGAGAG 83
Query 324 GCCTCAAGTAGAACGATACTTGCAGGAGCTGAAGATGGAAATTG-ATAGAATGGTGAAAA 382
||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 84 GCCCCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAA-TGAATAGAATGGTGAAGA 142
Query 383 AGATTGATCTCCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGTGTT 442
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGTGTT 202
Query 443 CAGTGACAGAACTTCAAGAGATTGACACTCAAATTGAGAAAAGCCTTCGTATTGTCAGGT 502
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 203 CAGTGACAGAACTTCAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGTATTGTCAGGT 262
Query 503 CAAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGGAGC 562
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CCAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGGAGC 322
Query 563 TCTTGAACGAGAGAAAAAGGCTGCTTGAAGAGCAAAATAGAGAAAGGTTGATGCGACCGG 622
|||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 323 TCTTGAACGAAAGAAAAAGGCTGCGTGAAGAGCAAATTAGAGAAATGTTGATGCGACCGG 382
Query 623 TGGTGCCAGCAACTTTACAAATATGTGATAAGGGTAATACTGAAGGTGGTCACAGAACCA 682
|||| | | ||||||||||||| ||||||||| |||| |||||||||||| ||| ||||
Sbjct 383 TGGTACAACCAACTTTACAAATCTGTGATAAGAGTAAAACTGAAGGTGGTTGCAGTACCA 442
Query 683 AACATTCATCAGAGGTTGAAACCGACCTATTTATCGGATTGCCCGTGACTCGGCTATAAC 742
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 443 AACATTCATCAGAGGTTGAAACCGACCTATTTATTGGATTGCCCGTGACTCGGCTATAAC 502
Query 743 ATATT-ACTTTGGTTCCAT 760
||||| |||| ||||||||
Sbjct 503 ATATTTACTTCGGTTCCAT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5