BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51880.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949736 jgi|Araly1|949736|scaffold_801623.1 1116 0.0
> Ahg949736 jgi|Araly1|949736|scaffold_801623.1
Length=724
Score = 1116 bits (604), Expect = 0.0
Identities = 676/710 (95%), Gaps = 7/710 (1%)
Strand=Plus/Plus
Query 65 AACCCAGAAACGCG-A-A-GATGGGAGACAATGGAGAATCAATAAAATGGCCAAAGATCA 121
|||||||||||||| | | |||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 AACCCAGAAACGCGAAGACGATGGGAGACAAAGGAGAATCAATAAAATGGCCGAAGATCA 60
Query 122 AACTCAAGTCGAATCTCAATGTCTCTTATCTTAAGAATCATGATCTCTTCACCGTGGAGA 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACTCAAATCGAATCTCAATGTCTCTTATCTTAAGAATCATGATCTCTTCACCGTGGAGA 120
Query 182 ACTGTCTCACTTCTGATGAATCAAAGGCTTTTGTTAAAATAGCAGAGTCTCTTGGTTTTA 241
||||| | | ||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 121 ACTGTTTGAGTTCTGATGAATCAAAGGGTTTTGTTAAAATTGCAGAGTCTCTTGGTTTCA 180
Query 242 CTCATCAAGGAAGTCGTGGTCCAGCCTATGGTGAAGCTTATAGGGATAACCATCGGATCT 301
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCACCAAGGAAGTCGTGGCCCAGCCTATGGTGAAGCTTATAGGGATAACCATCGGATCT 240
Query 302 CAGTGAACGATCCTGTCCTTGCTGATACGCTATGGCAATCAGGG-CTTTC-GAATTTGTT 359
|||||||||||||||||||||||||| || |||||||||| ||| ||||| | |||||||
Sbjct 241 CAGTGAACGATCCTGTCCTTGCTGATTCGATATGGCAATC-GGGTCTTTCTG-ATTTGTT 298
Query 360 TACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 TACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCTAACATTAGATTTTA 358
Query 420 CAGGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGA 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAGGTATAGTGCTGGTCAGCATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGA 418
Query 480 TGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGGAACAGCACAAAATCAAA 539
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 419 TGGAAAGCGGACCTATTACACATTGTTGATATATTTAAGCGGGAACAGCACGAAATCAAA 478
Query 540 ATCCAAGAGCAGTTCAAGCAAGACGAACGATTCTTCTTCGGCTGAGCCTTTAGTAGGTGG 599
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 479 ATCCAAGAGCAGTTCAAGCAAGACGAATGATTCTTCTTCAGCTGAGCCTTTAGTAGGTGG 538
Query 600 AGAAACCGTTTTTTATGGTTCAAGGAACAGTATTGTAGCTGAGGTAGCTCCAGTGGAAGG 659
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 AGAAACTGTCTTTTATGGTTCAAGGAACAGTATCGTAGCTGAGGTAGCTCCAGTGGAAGG 598
Query 660 TATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGGAGGAATGTCTC 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 599 TATGGCTCTCTTTCACATCCATGGAGACAAGTGCATGTTGCACGAAGGAAGGAGTGTTTC 658
Query 720 CAAAGGCGTCAAGTATGTGTTCCGTTCTGATGTTGTTTTTGCATGAAGAA 769
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 CAAAGGCGTCAAGTATGTGTTCCGTTCTGATGTTGTTTTTGCATAAAGAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5