BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51890.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495255 jgi|Araly1|495255|fgenesh2_kg.8__1071__AT5G51890.1 1893 0.0
> Ahg495255 jgi|Araly1|495255|fgenesh2_kg.8__1071__AT5G51890.1
Length=1216
Score = 1893 bits (1025), Expect = 0.0
Identities = 1156/1218 (95%), Gaps = 13/1218 (1%)
Strand=Plus/Plus
Query 4 CATCAAATCCTCAAACAACTTCAAGAAC-AAAGAGTGCTTTTCGAGGCCCAAAAC----A 58
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1 CATCAAATCCTCAAACAACTTCAAGACCAAAAGAGTGCTTTTCGAGGCCCAAAACAAAAA 60
Query 59 C--ATTACCATAAAATGGCATTCTCGAAGGGACTCATTTTTGCGATGA-TATTTGCGGTT 115
| | |||||||||||||||||||||| | ||||||||| ||||||| | ||| ||||
Sbjct 61 CAAAAAACCATAAAATGGCATTCTCGAAAGTACTCATTTTCGCGATGACCA-TTGTGGTT 119
Query 116 TTAGCGATAGTTAAGCCCTCAGAAGCTGCTCTTGATGCTCATTACTATGATCAATCGTGC 175
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 TTGGCGATAGTTAGGCCCTCAGAAGCTGCTCTTGATGCTCATTACTATGATCGATCGTGC 179
Query 176 CCTGCTGCTGAAAAAATCATACTTGAAACTGTTAGGAATGCTACTTTGTATGATCCCAAA 235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCGCTGCTGAAAAAATCATACTTGAAACTGTTAGGAATGCTACTTTGTATGATCCCAAA 239
Query 236 GTGCCTGCTCGTCTCCTAAGAATGTTCTTCCACGATTGCTTCATCAGGGGATGTGATGCG 295
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGCCTGCTCGTCTCCTCAGAATGTTCTTCCACGATTGCTTCATCAGGGGATGTGATGCG 299
Query 296 TCCATTCTACTAGATTCGACACGGTCAAACCAAGCTGAGAAGGATGGTCCTCCAAACATC 355
||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 TCCATTCTACTTGATTCGGCACGGTCAAACCAAGCTGAGAAGGATGGTCCTCCTAACATC 359
Query 356 TCAGTACGGTCATTTTACGTGATCGAAGATGCTAAGAGAAAGCTCGAAAAGGCTTGTCCT 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCGGTACGGTCATTTTACGTGATCGAAGATGCTAAGAGAAAGCTCGAAAAGGCTTGTCCT 419
Query 416 CGTACCGTGTCTTGTGCCGATGTAATCGCCATTGCCGCCAGAGATGTGGTCACCCTGTCC 475
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 420 CGTACCGTGTCTTGTGCCGATGTAATCGCCATCGCAGCCAGAGATGTGGTCACCCTGTCC 479
Query 476 GGTGGTCCTTATTGGAGCGTACTGAAAGGGCGAAAAGACGGGACAATTTCACGAGCCAAC 535
||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct 480 GGTGGTCCTTATTGGAGCGTATTGAAAGGGCGAAAAGATGGGACAATTTCGCGAGCCAAC 539
Query 536 GAGACTAGAAATCTCCCACCACCAACGTTCAATGTTTCTCAACTGATACAAAGCTTTGCA 595
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GAGACTAGAAATCTCCCAGCACCAACGTTCAATGTTTCTCAACTGATCCAAAGCTTTGCA 599
Query 596 GCAAGAGGCTTGTCGGTGAAAGACATGGTTACGCTCTCAGGTGGCCACACCATAGGGTTC 655
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 GCAAGAGGATTGTCGGTGAAAGACATGGTTACACTCTCAGGTGGCCACACCATAGGGTTC 659
Query 656 TCTCACTGTTCTTCTTTCGAGTCCCGTCTTCAAAACTTCAGCAAATTCCATGACATAGAT 715
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 660 TCTCACTGTTCTTCTTTCGAGTCCCGTCTTCAAAACTTCAGCAAAATCCATGACATTGAT 719
Query 716 CCTTCGATGAACTATGCGTTCGCGCAAACCTTGAAAAAGAAATGCCCGAGAACATCTAAC 775
|||||||||||||||||||| || |||||| |||||| |||||| |||||| | ||||||
Sbjct 720 CCTTCGATGAACTATGCGTTTGCACAAACCCTGAAAAGGAAATGTCCGAGATCGTCTAAC 779
Query 776 CGAGGCAAGAACGCAGGGACAGTCTTGGACTCTACTTCCTCGGTTTTCGACAATGTTTAC 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 CGAGGCAAGAACGCAGGGACAGTCTTGGACTCTACGTCCTCGGTTTTCGACAATGTTTAC 839
Query 836 TACAAGCAAATTTTGTCCGGGAAAGGAGTGTTTGGGTCTGATCAGGCACTTCTAGGCGAT 895
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 TACAAGCAGATTTTGTCCGGGAAAGGAGTGTTTGGGTCTGATCAGGCCCTTCTAGGCGAT 899
Query 896 TCCCGGACTAAGTGGATCGTTGAGACGTTTGCTCAAGACCAAAAAGCTTTCTTCAGAGAG 955
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 900 TCTCGGACTAAGTGGATCGTTGAGACGTTTGCTCGAGACCAAAAAGCTTTCTTCAAAGAG 959
Query 956 TTTGCAGCTTCCATGGTAAAACTTGGAAACTTTGGAGTCAAAGAGACTGGACAAGTTAGA 1015
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 960 TTTGCAGCTTCCATGGTAAAACTTGGAAACTTTGGAGTCAAGGAGACCGGACAAGTGAGA 1019
Query 1016 GTTAACACTCGCTTCGTCAACTAAAAGCATATTCCTAACAAGCAACCAAATGAGAGTTTT 1075
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1020 GTTAACACTCGCTTCGTCAACTAAAAGCATAACCCTAACAAGCAACCAAATGAGAGTTTT 1079
Query 1076 CTTTTCTTCAAATTTGATTTCATTTATACTTGATAT-T-ATAATAATGTAGACCGGCCAA 1133
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1080 CTTTTCTTCAAATTTGATTTCATTTATACTTGATATATTATAATAATGTAGACCGGCCAA 1139
Query 1134 TATATGGATCGGTT-TTAAAACCTCCTAATTCTCCATGAGTTGCAGAGTATGCTTTAAAA 1192
| |||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 1140 TTTATGGATCGGTTATTAAA-CCTTCTAATTCTCTATGAGTTGCAGAGTATGCTTTAAAA 1198
Query 1193 GTAAATTTGTTCTGCTTC 1210
||||||||||||||||||
Sbjct 1199 GTAAATTTGTTCTGCTTC 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5