BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51910.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495258 jgi|Araly1|495258|fgenesh2_kg.8__1074__AT5G51910.2 1247 0.0
> Ahg495258 jgi|Araly1|495258|fgenesh2_kg.8__1074__AT5G51910.2
Length=959
Score = 1247 bits (675), Expect = 0.0
Identities = 848/926 (92%), Gaps = 34/926 (4%)
Strand=Plus/Plus
Query 99 TTCTAGGGTTTTGTGGTAAATGGAATCGAATCACGAAGGCAACGCGATACAAGTGATTGA 158
|||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 41 TTCTAGGGTTTTGTTGTAAATGGAATCGAATCAAGAAGGCAAAGCGATACAAGAGATTGA 100
Query 159 CCAAGTAACAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGG--T-AT 215
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 101 CCAAGTAGCAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGGTATGAT 160
Query 216 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGAAGACTAAACCGGCTCCGAA 275
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 161 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGATGGCTAAACCGGCTCCGAA 220
Query 276 GAGACCGACTTCTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 335
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GAGAGCGA---CTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 277
Query 336 GCCGGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCCGA 395
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 278 GCCTGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCTGA 337
Query 396 CGGAGAAACGATACGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 455
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CGGAGAAACCATTCGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 397
Query 456 AACCGGAACTGTACCGGCTATTGCTGTATCGGTTAACGGAACTTTAAAAATCCCGACGAG 515
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 398 AACCGGGACTGTACCGGCTATTGCTGTTTCGGTTAACGGAACTTTAAAAATACCGACGAG 457
Query 516 CTCTCCAGTGTTGA-A-TGACGGCGGC-----CG-TGACGGTGACGGTGACCTAATAAAG 567
| |||| | || || | | ||||||| || ||||||||||||||||||||| |||
Sbjct 458 CGCTCC-G-GTAGAGAGTAACGGCGGTGGTGACGGTGACGGTGACGGTGACCTAATGAAG 515
Query 568 AAACGGAGGAAGAGAAACTGTACGAGCGATTTCGTAGACGTTAATGA-CA-G-C---TGT 621
|||||||||||||||||||||||||| || ||||||||||||||||| || | | |||
Sbjct 516 AAACGGAGGAAGAGAAACTGTACGAGTGAGTTCGTAGACGTTAATGAACATGACAGCTGT 575
Query 622 CATAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAACTACGGCGTTAATATC 681
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 576 TACAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAATTACGGTGTTAATATC 635
Query 682 CTGAACGTTAATACACAGGGGTTTG-TGCCGTTTTGGCCTATGGGTATGGGTACTGCGTT 740
||||||| ||||| || ||||| | ||||||||||||||||||||||||||||| |||
Sbjct 636 ATGAACGTCAATACGCATGGGTT-GATGCCGTTTTGGCCTATGGGTATGGGTACTACGTA 694
Query 741 TGTTACTGGTGGGCCGGATCAAATGGGCCAAATGTGGGCTATTCCTACCGTTGCTACAGC 800
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 695 TGTTACTGGTGGGCCGAATCAAATGGGCCAAATGTGGGCTATTCCTACGGTTGCTACAGC 754
Query 801 TCCGTTTCTGAATGTTGGTGCTA-GACCGGTGTCTAGTTATG---TCTCAAACGCTTCAG 856
| |||||||||| |||||||||| | |||||||||||||| | |||||||||||||||
Sbjct 755 TTCGTTTCTGAACGTTGGTGCTACG-CCGGTGTCTAGTTACGACGTCTCAAACGCTTCAG 813
Query 857 ACGCTGAGGCGGAGATGGAAACGAGCGGTGGCGGAA---CGACGCAACCGCTGAGGGATT 913
|||||| |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 814 CCGCTGAACCGGAGATGGAAACGAGCGGTGGTGGTGGTGCGACGCAACCGCTGAGGGATT 873
Query 914 TTTCGTTGGAGATTTATGATAAGAGAG-AGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 972
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 874 TTTCGTTGGAGATTTATGATAAGA-AGGAGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 932
Query 973 TCTCCGTCTTCATGTCATGAGACTTA 998
||||||||||||||||| ||||||||
Sbjct 933 TCTCCGTCTTCATGTCACGAGACTTA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5