BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51920.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949741 jgi|Araly1|949741|scaffold_801628.1 2521 0.0
> Ahg949741 jgi|Araly1|949741|scaffold_801628.1
Length=1761
Score = 2521 bits (1365), Expect = 0.0
Identities = 1643/1775 (93%), Gaps = 28/1775 (2%)
Strand=Plus/Plus
Query 20 CTTTTGCACCCaaaaa-aaGAAGAAAAATGCACCAACCCTTTCCCGGAGATTCTTCACCA 78
|||||||| ||||||| | |||| ||||||| ||||| ||||| |||||||| |||||
Sbjct 1 CTTTTGCA-CCAAAAAGAGGAAG-AAAATGCTTCAACCATTTCCGGGAGATTCACCACCA 58
Query 79 CCAAACTGCCTTCACGGCTGCTTCTCATCGTCACCATTTCACGGTACCACCAG-CTCCGA 137
||||||||||||||||||||||||||||||||||||||||||||| || || | |||| |
Sbjct 59 CCAAACTGCCTTCACGGCTGCTTCTCATCGTCACCATTTCACGGTGCCGCC-GCCTCCAA 117
Query 138 ACACCCACCACATTCAACCCCCACCGTCACTTCCGCTACTCTCCGCCGTAATTTCGCCCA 197
|||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 118 ACACCCACCAGATTCAATCCCCACCGTCACATCCGCCACTCTCCGCCGTAATTTCGCCCA 177
Query 198 AACCACCGTCTCCACCATCTTCCCGGACACCGAATTCACCGACCCAAATTCTCTTCCTTC 257
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 178 AACCACGGTCTCCGCCATCTTCCCGGACACCGAATTCGTCGACCCAAATTCTCTCCCTTC 237
Query 258 TCATCAAGAATCTTTCTCCGATTTCATCCAAGCTTACCCCAACTACTCCGACACTTACAA 317
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 TCATCAAGAATCCTTCTCCGATTTCATCCAAGCTTACCCCAATTACTCCGACACTTACAA 297
Query 318 GATCGACCGTCTTAGATCCGACCACTACTTTCACTTGGGTTTATCACATTACACATGTCT 377
|||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 298 GATCGACCGTATCAGATCCGACCACTACTTTCACTTGGGGTTATCACATTACACGTGTCT 357
Query 378 TGATTACATAGGAATTGGTTTGTACTCTTACTCTCAGTTGCTCAACTACGACCCTTCCAC 437
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGATTACATTGGAATTGGTTTATACTCTTACTCTCAGTTGCTCAACTACGACCCTTCCAC 417
Query 438 TTACCAGATCTCTTCTTCCTTGTCTGAAAGTCCCTTCTTCAGTGTTTCTCCCAAGATTGG 497
||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 418 TTATCAGATCTCCTCTTCCTTGTCTGAAAGTCCTTTCTTTAGTGTGTCTCCCAAGATTGG 477
Query 498 TAACCTTAAGGAAAAGCTTCTCAACGATGGAGGTCAAGAAACAGAGTTTGAGTACTCAAT 557
|||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 478 TAACCTCAAGGAGAAGCTTCTCCACGATGGAGGTCAAGAAACAGAATTTGAGTACTCGAT 537
Query 558 GAAA-AGAAGAATAATGGGGTTTCTCAAAATCTCCGAGGAAGACTACTCAATGGTCTTCA 616
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 -AAAGAGAAGAATCATGGGTTTTCTCAAAATCTCCGAGGAAGACTACTCAATGGTCTTCA 596
Query 617 CCGCTAATAGAACTTCTGCTTTCAGGCTCGTCGCCGAGTCTTACCCGTTTAACTCAAAAC 676
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 CCGCCAATAGAACTTCTGCTTTCAGGCTCGTCGCTGAGTCTTACCCGTTTAACTCAAAAC 656
Query 677 GGAAGCTCTTGACGGTTTACGACTACGAGAGTGAGGCGGTGAGTGAAATAAACAGAGTCT 736
| ||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 657 GAAAGCTTTTGACGGTTTACGACTACGAAAGCGAGGCGGTGAATGAAATAAACAGAGTCT 716
Query 737 CTGAGAAACGTGGAGCCAAAGTAGCTGCAGCTGAATTCTCATGGCCAAGACTCAAACTCT 796
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 717 CTGAGAAACGTGGAGCCAAAGTAGTTGCGGCTGAATTCTCATGGCCAAGACTCAAACTCT 776
Query 797 GTTCGTCCAAGCTGA-GAAAACTGGTTACTGCTGGGAAAAACGGAAGCAAGACGAAGAAG 855
||||||||||||||| ||| | |||| ||||||||||||||||||||||||| |||||||
Sbjct 777 GTTCGTCCAAGCTGAGGAAGA-TGGTCACTGCTGGGAAAAACGGAAGCAAGAAGAAGAAG 835
Query 856 AAAGGTATTTACGTCTTTCCGCTTCATTCTAGGGTTACAGGATCTAGGTATCCGTATCTA 915
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAAGGTATTTTCGTCTTTCCGCTTCATTCTAGGGTTACAGGATCTAGGTATCCGTATCTA 895
Query 916 TGGATGAGTGTGGCACAAGAAAATGGGTGGCATGTAATGATCGATGCATGCGGTTTGGGA 975
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 896 TGGATGAGTGTGGCGCAAGAAAATGGGTGGCATGTGATGATTGATGCTTGCGGTTTGGGA 955
Query 976 CCTAAGGATATGGATAGTTTCGGGCTTTCTATATATAACCCCGATTTCATGGTGTGTTCG 1035
|||||||||||||| || ||||| || || ||||||||||||||||||||||||||||||
Sbjct 956 CCTAAGGATATGGACAGCTTCGGTCTCTCGATATATAACCCCGATTTCATGGTGTGTTCG 1015
Query 1036 TTCTACAAGGTGTTTGGAGAAAACCCTTCCGGATTTGGTTGCTTGTTTGTCAAGAAATCC 1095
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1016 TTCTACAAGGTGTTTGGAGAAAACCCTTCGGGATTTGGTTGCTTGTTTGTCAAGAAATCC 1075
Query 1096 ACCATATC-GATTCTTGAATCTTCCACTGG-TCCAGGTATGATTAACCTCGTACCTACCG 1153
||||| || |||||||||||||| |||||| || ||||||| |||||||||||||||| |
Sbjct 1076 ACCAT-TCCGATTCTTGAATCTTACACTGGCTC-AGGTATGGTTAACCTCGTACCTACAG 1133
Query 1154 ACAATCCGATTTCATTACACGCGTTGGAA-A--TCAACCGAACACAAACAGA-TTCGGAA 1209
|||||||| |||| ||||||||||||||| | ||| ||| ||||||||||| || |||
Sbjct 1134 ACAATCCGCTTTCGTTACACGCGTTGGAAGAAATCAGCCGGACACAAACAGAATT-GGAT 1192
Query 1210 GAAACATATAGCTTTAGCTCTAGTGTCGAATACAAAGGCCTAGATCATGTAGATTCACTA 1269
||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1193 GAAACATATAGCTTTAGTTCTAGCGTCGAATACAAAGGCCTAGATCATGTGGACTCACTA 1252
Query 1270 GGGTTGGTAGCAACAGGGAACAGATCAAGATGCTTGATAAATTGGTTGGTAAGTGCTCTC 1329
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1253 GGGTTGGTAGCAACAGGGAATAGGTCAAGATGCTTGATAAATTGGTTAGTAAGTGCTCTC 1312
Query 1330 TACAAACTCAAACATTCAACAACTAGTCGTCTAGTTAAAATCTACGGTCCGAAAG-TTAA 1388
|||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||
Sbjct 1313 TACAAACTCAAACATTCAACAACTAGTCGTCTCGTCAAAATCTACGGTCC-AAAGGTTAA 1371
Query 1389 TTTCAATCGAGGACCAGCGGTTGCGTTCAATCTATTCAACCATAAAGGCGAAAAAATCGA 1448
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 1372 TTTCAATCGAGGACCAGCGGTTGCATTCAATCTATTCAACCAAAAAGGCGAGAAAATAGA 1431
Query 1449 ACCTTTTATCGTGCAGAAGTTAGCCGA-ATGCAGCAACATCTCACTCGGTAAAAG-TTTC 1506
||||||||||||||||||| ||||||| | ||||||| |||||| |||| ||||| ||||
Sbjct 1432 ACCTTTTATCGTGCAGAAGCTAGCCGATA-GCAGCAATATCTCAATCGG-AAAAGGTTTC 1489
Query 1507 TTGAAGAACATCTTGTTCCAAGAAGACTACGAAGGCGTGAAAGATAGAGTTTTTGAGAAG 1566
|||||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||
Sbjct 1490 TTGAAGAACATCTTGTTCGAAGAGGACAACGAAGGAGTGAAAGATAGAGTGTTTGAGAAG 1549
Query 1567 AAAAGAAACAGAGACGTCGACGAACCAAGGA-TCTCTGTTCTCACTGCTGCGTTAGGGTT 1625
|||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1550 AAAAAAAACAGAGACATCGACGAACCG-GGAATCTCTGTTCTCACTGCTGCGTTAGGGTT 1608
Query 1626 TCTTGCTAATTTCGAAGATGTTTATAAACTTTGGATATTCGTTGCTCGGTTTTTGGATTC 1685
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1609 TCTTGCTAATTTCGAAGATGTTTATAAGCTTTGGATTTTCGTTGCTCGGTTTTTAGATTC 1668
Query 1686 AGAGTTTGTTGATAAAGAGAGTGTGAGATGTGGAGTTCATGTTTTTGAACATAAGAACCG 1745
||| ||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 1669 AGAATTTGTAGATAAAGAGAGTGGGAGATGTGGTGTTCATGTTTTTGAACACAAGAACCG 1728
Query 1746 TGAAGTAGTCTAGTTAACATATAGCCTAGTTTTGG 1780
|||||||||||||| | ||||||||||||||||
Sbjct 1729 CGAAGTAGTCTAGTTTA--TATAGCCTAGTTTTGG 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5