BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51940.1
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495261 jgi|Araly1|495261|fgenesh2_kg.8__1077__AT5G51940.1 809 0.0
Ahg930784 jgi|Araly1|930784|scaffold_303241.1 678 0.0
> Ahg495261 jgi|Araly1|495261|fgenesh2_kg.8__1077__AT5G51940.1
Length=486
Score = 809 bits (438), Expect = 0.0
Identities = 470/486 (97%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 79 AGGAGAAAGCGAAACCAAAAATCGACATTAATGGCTGACGAAGATTACAACGACGTCGAT 138
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AGGAGAAAGCGAAATCTAAAATCGACATTAATGGCTGACGAAGATTACAACGAAGTCGAT 60
Query 139 GACTTGGGATATGAGGATGAGCCAGCAGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGAT 198
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GACTTGGGATATGAGGATGAGCCAGTGGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGAT 120
Query 199 GTTGAAATGAAGGAGAATGATGATGTCAATGGTGAGCCTATTGAAGCTGAAGATAAAGTC 258
| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 121 GCTGATATGAAGGAGAATGATGATGTCAATGGTGAGCCTCTTGAAGCTGAAGATAAGGTC 180
Query 259 GAAACAGAACCTGTGCAACGTCCACGCAAAACGTCAAAGTTTATGACCAAGTATGAGCGT 318
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAAACAGAACCTGTCCAACGTCCACGTAAAACGTCAAAGTTTATGACCAAGTATGAGCGT 240
Query 319 GCTCGTATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCGTATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAG 300
Query 379 CTAGAGGGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATA 438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGAGGGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATA 360
Query 439 CCATTCACTATTAGACGCTATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAA 498
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATTCACTATTAGACGATATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAA 420
Query 499 CTGATCGTGGAAGACTCATGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGA 558
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 421 CTGATCGTGGAAGACTCATGGAAACGTCAAGTAGGTGGTGATTGATAATCTGACCACCGA 480
Query 559 CAAATC 564
||||||
Sbjct 481 CAAATC 486
> Ahg930784 jgi|Araly1|930784|scaffold_303241.1
Length=477
Score = 678 bits (367), Expect = 0.0
Identities = 433/466 (93%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 97 AAATCGACATTAATGGCTGACGAAGATTACAACGACGTCGATGACTTGGGATATGAGGAT 156
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 10 AAATCGACTTTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGGGATATGAGGAT 69
Query 157 GAGCCAGCAGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGATGTTGAAATGAAGGAGAAT 216
||||||| ||||||||||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 70 GAGCCAGTTGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAAC 129
Query 217 GATGATGTCAATGGTGAGCCTATTGAAGCTGAAGATAAAGTCGAAACAGAACCTGTGCAA 276
|||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||||||
Sbjct 130 GATGATGTTAATGGTGAGCCTATGGAAACAGAAGATAAGGTTGAAACAGAACCTGTGCAA 189
Query 277 CGTCCACGCAAAACGTCAAAGTTTATGACCAAGTATGAGCGTGCTCGTATCCTCGGCACT 336
|||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 190 CGTCCACGTAAAACGTCCAAGTTTATGACCAAGTATGAACGTGCACGTATCCTCGGCACT 249
Query 337 CGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTAGAGGGTGAGACTGAT 396
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 250 CGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAGGGTGAGACTGAT 309
Query 397 CCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATACCATTCACTATTAGACGC 456
|||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||
Sbjct 310 CCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACCATTAGACGA 369
Query 457 TATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAACTGATCGTGGAAGACTCA 516
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 370 TATCTACCTGATGGGAGTTTTGAAGAATGGGGAGTCGATGAACTGATCGTGGAAGACTCG 429
Query 517 TGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGACAAA 562
|||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 430 TGGAAACGTCAAGTTGGTGGTGATTGATAATCTGGCAAGAGACAAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25504231473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5