BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51960.1
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495744 jgi|Araly1|495744|fgenesh2_kg.8__1560__AT5G51960.1 508 1e-143
Ahg949747 jgi|Araly1|949747|scaffold_801634.1 499 9e-141
Ahg887306 jgi|Araly1|887306|Al_scaffold_0792_1 279 1e-74
> Ahg495744 jgi|Araly1|495744|fgenesh2_kg.8__1560__AT5G51960.1
Length=433
Score = 508 bits (275), Expect = 1e-143
Identities = 317/337 (94%), Gaps = 3/337 (1%)
Strand=Plus/Plus
Query 75 AAAGAAGAAGATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAA 134
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 1 AAAGAAGAAGATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTTTATCGTGAGCTTCTTAA 60
Query 135 AGCAGTGGTGAAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTA 193
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 61 AGCAGTGGTGAAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTGA 119
Query 194 AGCAAGAATTTCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACAT 253
|||||||||| || |||||||||||||| |||| || |||||||| || |||||||| |
Sbjct 120 AGCAAGAATTCCGGAAGAATGCAAACTCGGAGACTATCAACCTTGCCCGCAATTACACTT 179
Query 254 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGCTGTTCTCATACAACATTGCGGTTG 313
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGTTGTTCTCATACAACATTGCGGTTG 239
Query 314 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCCAGTGTAGGGCTTCGTC 373
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCTAGTGTAGGGCTTCGTC 299
Query 374 TTCCTGAAGTTTACGAGCCTTGATCATGCATTCATTC 410
|||||||||||||||||||||||||| |||||| |||
Sbjct 300 TTCCTGAAGTTTACGAGCCTTGATCAGGCATTC-TTC 335
Score = 139 bits (75), Expect = 2e-32
Identities = 95/104 (91%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 445 TTCTTCATTTCTGTGGACAGGTCTTTGGTTAATTTTTGATTATATGAGATAGTAAATGAA 504
|||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| ||| |
Sbjct 330 TTCTTCATGTCTATGGACAGGTCTTGGGTTAATTTTTGATTAAATGAGATAGTAGATGGA 389
Query 505 GCCAGAGAGCTCTT-TT--CCTTTAAGCTTTTAAGTATTGACAA 545
|||||||||||||| || |||||||||||||||||||||||||
Sbjct 390 GCCAGAGAGCTCTTCTTTTCCTTTAAGCTTTTAAGTATTGACAA 433
> Ahg949747 jgi|Araly1|949747|scaffold_801634.1
Length=352
Score = 499 bits (270), Expect = 9e-141
Identities = 316/338 (93%), Gaps = 3/338 (1%)
Strand=Plus/Plus
Query 75 AAAGAAGAAGATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAA 134
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||
Sbjct 11 AAAGAAGAAGATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTATATCGTGGCCTTCTTAA 70
Query 135 AGCAGTGGTGAAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTA 193
||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 71 AGCAGTGTTGAAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTTA 129
Query 194 AGCAAGAATTTCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACAT 253
|||||||||| || |||||||||||||||||||| || ||||| || || |||||||| |
Sbjct 130 AGCAAGAATTCCGGAAGAATGCAAACTCAGAGAATATCAACCTCGCCCGCAATTACACTT 189
Query 254 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGCTGTTCTCATACAACATTGCGGTTG 313
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 190 ATCTTCTCAATAGCATTCACTCTCACAAGGATTTGTTGTTCTCATACAACATTGCGGTTG 249
Query 314 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCCAGTGTAGGGCTTCGTC 373
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCTAGTGTAGGGCTTCGTC 309
Query 374 TTCCTGAAGTTTACGAGCCTTGATCATGCATT-CATTC 410
|||||||||||||||||||||||||| ||| | |||||
Sbjct 310 TTCCTGAAGTTTACGAGCCTTGATCAGGCAATGCATTC 347
> Ahg887306 jgi|Araly1|887306|Al_scaffold_0792_1
Length=291
Score = 279 bits (151), Expect = 1e-74
Identities = 184/200 (92%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 85 ATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAAAGCAGTGGTG 144
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTTTATCGTGAGCTTCTTAAAGCAGTGGTG 60
Query 145 AAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTAAGCAAGAATT 203
||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 61 AAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTGAAGCAAGAATT 119
Query 204 TCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACATATCTTCTCAA 263
|| |||||||||||||| |||| || |||||||| || |||||||| |||||||||||
Sbjct 120 CCGGAAGAATGCAAACTCGGAGACTATCAACCTTGCCCGCAATTACACTTATCTTCTCAA 179
Query 264 TAGCATTCACTCTCACAAGG 283
||||||||||||||||||||
Sbjct 180 TAGCATTCACTCTCACAAGG 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22988118951
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5