BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51980.2
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1 2169 0.0
Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349 939 0.0
> Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1
Length=1714
Score = 2169 bits (1174), Expect = 0.0
Identities = 1379/1474 (94%), Gaps = 29/1474 (2%)
Strand=Plus/Plus
Query 48 TTTTTCTCTGCATTATTATCACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTC 107
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTCTCTTCATTATTATTACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTT 60
Query 108 ATACTTTCATATTTTGATTACTACTTCTCAGAGATTCTTTTGAGAAAGAGAGTGAGAGGC 167
|||||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||| |
Sbjct 61 ATACTTCCATATTTTGATTACTACTTTTCAGAGATTGTTTTTAGAAAGAGAGT--GAGTC 118
Query 168 AATaaaaaaaGCTATGGATTTCGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 227
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATAAAAGAAGCTATGGATTTTGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 178
Query 228 ---------CGGTGGCGGTGGCGGGTCAACTCGTCCGATGGCACCAACGGATACAAGACA 278
||| ||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 179 CGGCGGCGGCGGCGGCGGCGGCGGGTCAACTCGTACGATGGCACCAACGGATACAAGGCA 238
Query 279 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 298
Query 339 TCGGGAATTACCGGGTCCTGGTCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAG 398
||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 299 TCGAGAATTACCGGGTCCTGGTCCGGGTCAGGGTCAAGGTCCGGGTTATACAAACAAAAG 358
Query 399 GGTCGCTGAGGAATCTGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGG 458
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 359 GGTCGCTGAAGAATCTGGTTTTGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAACGG 418
Query 459 GAACTCGAGTAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAA 518
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 GAACTCGAATAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACAAAGACTGAGAA 478
Query 519 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCA 578
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 479 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACGTACGGTGATAAGTGTAGGTACTTGCA 538
Query 579 TTGTTGGAGTAAAGGAGAGAGCTTTGCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 638
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 TTGTTGGAGTAAAGGAGAGAGCTTTTCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 598
Query 639 TGTTAGTGGTATTGCTTTGCCTTCTGGTTCTGATAAGCTTTACACTGGAAGTAAAGATGA 698
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 TGTTAGTGGTATTGCTTTGCCTTCTGGCTCTGATAAGCTTTACACTGGAAGTAAAGATGA 658
Query 699 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGG 758
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTTAAACTTGGTGG 718
Query 759 GGAAATTGGCTGTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGT 818
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 719 GGAAGTTGGCTGTGTGCTTAGCGAAGGCCCGTGGCTATTGGTTGGCATGCCAAATCTTGT 778
Query 819 CAAGGCGTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGT 878
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 779 CAAGGCGTGGAATATTGAAACCAATGCAGACCAGAGTCTAAATGGACCTGTTGGCCAAGT 838
Query 879 CTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTT 938
|| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 839 ATACTCTCTCGTTGTGGGTACTGATCTTCTCTTCGCTGGTACACAGGATGGCTCTATTTT 898
Query 939 GGCATGGAGATATAATGCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCA 998
||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 899 GGCATGGAGATATAATGCTGCCACTAACTGTTTCGAACCAGCGGCATCACTGACGGGCCA 958
Query 999 TACACTTGCAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGA 1058
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 959 TACACTTGCAGTTGTTACCTTATATGTTGGGGCAAACAGACTTTATTCTGGTTCCATGGA 1018
Query 1059 CAAAACTATAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCA 1118
||||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||
Sbjct 1019 CAAAACTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATACAAACACTCACGGACCA 1078
Query 1119 TTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGA 1178
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1079 TACATCAGTTGTGATGTCTCTCATTTGCTGGGATCAGTTTCTTTTGTCTTGTTCATTGGA 1138
Query 1179 CAACACGGTTAAGATATGGGCTGCAATCGAAGGTGGCAATTTGGAAGTAACATATACTCA 1238
||||||||||||||||||||||||| | |||||||| |||||||||| ||||| |||||
Sbjct 1139 CAACACGGTTAAGATATGGGCTGCAGTTGAAGGTGGAAATTTGGAAGCGACATACACTCA 1198
Query 1239 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCGGT 1258
Query 1299 TTTGTTATGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCCTTAGGTTT 1358
|||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 1259 TTTGTTATGCTCTTGCAATGACAATACCTTGCGCCTCTACGACTTACCATC---A--TTT 1313
Query 1359 GTTCATTAGATTTACGGAGAGGGGAAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1418
| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 ----A---------CGGAGAGGGGGAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1360
Query 1419 GATAGGTCCCGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1478
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GATTGGTCCTGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1420
Query 1479 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1512
||||||||||||||||||||||||||||||||||
Sbjct 1421 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1454
> Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349
Length=2004
Score = 939 bits (508), Expect = 0.0
Identities = 969/1185 (82%), Gaps = 57/1185 (5%)
Strand=Plus/Plus
Query 181 ATGGATTTCGATTTGAACGGAGGAAACAA-ACGAGTC-TTCAACAGACTCGGTGGCGGTG 238
|||||||| ||| |||||||||||||||| | ||||| ||||| ||||| ||||||
Sbjct 1 ATGGATTTAGATATGAACGGAGGAAACAAGA-GAGTCTTTCAA-AGACT---AAGCGGTG 55
Query 239 GCGGGTC-AACTCGTCCGATGGCACCAACGGA-TAC-AAGACAAAAGGTTTGTTTCCACT 295
|| || || ||| || | | | ||||| | | || || ||||||||||||||||
Sbjct 56 GC---TCGAA-TCGGCC----G-A-CGACGGACT-CGAA-TCAGAAGGTTTGTTTCCACT 103
Query 296 GGCGAGCCGGGCGTTGTAATCGTT-CTCCTTGTCCTTATCTACATCGGGAATTACCGGGT 354
||||||| || || || ||||||| | ||||| ||||| || ||| | ||||| ||||||
Sbjct 104 GGCGAGCTGGCCGGTGCAATCGTTAC-CCTTGCCCTTACCTGCATAGAGAATTGCCGGGT 162
Query 355 CCTGG-TCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAGGGTCGCTGAGGAATC 413
|| || |||||||| | | | | |||||| |||||||||||||| |||||
Sbjct 163 CC-GGCTCCGGGTC-----C----TTC--G-TCTACGAATAAAAGGGTCGCTGATGAATC 209
Query 414 TGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGGGAACTCGAGTAGTAG 473
|||||| ||||| |||||||| |||||||| || || || | ||| ||| | || ||
Sbjct 210 TGGTTTTGCGGGCCCGAGTCACCGGAGAGGGCCAGGATTCAGCGGG-ACT-G-CTAATAA 266
Query 474 TTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAAAGTTTGCAACTTTTG 533
||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| || ||
Sbjct 267 CTGGGGAAGATTCGGTGGGAACAGAACGGTGACGAAGACGGAGAAACTTTGCAAATTCTG 326
Query 534 GGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCATTGTTGGAGTAAAGG 593
||| ||||| |||||| | ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 327 GGTTGATGGAAATTGCCCTTACGGTGATAAATGTAGATACTTGCATTGTTGGAGCAACGG 386
Query 594 AGAGAGCTTT-GCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCTTGTTAGTGGTATTG 652
||| || ||| | |||||||| ||||| || || ||| ||||| |||| | ||| ||||
Sbjct 387 AGATAG-TTTCTCCTTGTTGACGCAGCTAGACGGACATCAGAAGGTTGTCACTGGGATTG 445
Query 653 CTTTGCCTTCTGGTTCTGATAAGCTTTACACTG-GAAGTAAAGATGAGACCT-TGCGTG- 709
|| |||| || || || |||||||||||||||| | ||||||||||| | || |||| |
Sbjct 446 CTCTGCCATCAGGATCAGATAAGCTTTACACTGCG-AGTAAAGATGA-AACTGTGCG-GA 502
Query 710 TTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGGGGAAATTGGCT 769
| ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 503 TATGGGATTGTGCTTCTGGACAGTGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCT 562
Query 770 GTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGTCAAGGCGTGGA 829
| || ||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 563 GCATGATTAGTGAAGGCCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGGCGTGGA 622
Query 830 ATATTGAAACCAATGCT-GACCAGAGTCTAAGTGGACCTGTTGGCCAAGTCTATTCTCTT 888
|||| ||| ||||| | |||| |||||| | |||||||||||||||||| ||||| ||
Sbjct 623 ATATCCAAAACAATG-TAGACCTGAGTCTCACTGGACCTGTTGGCCAAGTATATTCA-TT 680
Query 889 G-TTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTTGGCATGGAG 947
| ||||||| |||||||| || || ||||| ||||| ||||| |||||||||| ||||
Sbjct 681 GGTTGTGGGCACTGATCTACTGTTCGCTGGCACACAAGATGGGTCTATTTTGGTTTGGAA 740
Query 948 ATATAAT-GCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCATACACTTG 1006
||| ||| || |||||| ||||||||| ||| | || ||| | | |||||| || ||||
Sbjct 741 ATACAATAGCA-CCACTAGCTGTTTTGATCCAGCTGCATCATTAATGGGCCACACCCTTG 799
Query 1007 CAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGACAAAACTA 1066
|||||||| | |||||||||||||| |||||||| ||||| ||| |||||||||| |||
Sbjct 800 CAGTTGTTTCTTTATATGTTGGGGCAAACAGACTCTATTCTGGTGCCATGGACAATTCTA 859
Query 1067 TAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAG 1126
||||||||||| | |||||||||| |||||||||||||| || || || ||| | ||||
Sbjct 860 TAAAAGTTTGGTGCCTGGATAATCTGCAGTGTATACAAACCCTTACAGAGCATACTTCAG 919
Query 1127 TTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGACAACACGG 1186
|||| ||||||||||||||||||||||| || ||| |||| ||||| |||||||| || |
Sbjct 920 TTGTCATGTCTCTCATTTGCTGGGATCAGTTTCTTCTGTCATGTTCTTTGGACAATACCG 979
Query 1187 TTAAGATATGGGCTGCAA-TCGAAGGTGGCAATTTGGAAGTAACATATACTCACAAAGAA 1245
| |||||||||||||| | | |||||||| || || ||||| ||||||||||||||||||
Sbjct 980 TCAAGATATGGGCTGCTACT-GAAGGTGGAAACTTAGAAGTCACATATACTCACAAAGAA 1038
Query 1246 GAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGTTTTGTTA 1305
||| | || ||||||||||| |||||||| |||||||||||||||||||| || ||| ||
Sbjct 1039 GAATACGGCGTGCTAGCTCTCTGTGGTGTCCATGATGCAGAAGCCAAGCCAGTATTGCTA 1098
Query 1306 TGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCC 1350
|| | ||||||||||| | |||| ||| || || || ||||||
Sbjct 1099 TGTTCGTGCAATGACAATTCATTGCACCTTTATGATTTGCCATCC 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5