BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51990.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949750 jgi|Araly1|949750|scaffold_801637.1 998 0.0
> Ahg949750 jgi|Araly1|949750|scaffold_801637.1
Length=715
Score = 998 bits (540), Expect = 0.0
Identities = 635/680 (93%), Gaps = 10/680 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCATTTTACTCTA-CATTCCCAGACTCGTTTCTCTCAATCTCCGATCATAGATC 59
|||||||| |||||||| | | ||| |||||||||||||||||||||||||| | |||||
Sbjct 21 ATGAATCCCTTTTACTC-AGCTTTCTCAGACTCGTTTCTCTCAATCTCCGATGACAGATC 79
Query 60 TCCGGTTTCAGACAGTAGTGAGTGTTCACCAAAGTTAGCTTCAAGTTGTCCAAAGAAACG 119
||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 80 TCCGGTTTCGGACAGTAGTGAGTGTTCACCGAAGTTAGCTTCGAGTTGTCCTAAGAAACG 139
Query 120 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 199
Query 180 GAATTCTGGTAAATGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAATCTAGGATTTGGTT 239
||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 200 GAATTCTGGTAAATGGGTTTGTGAAGTGAGGGAACCGAATAAGAAATCTAGGATTTGGTT 259
Query 240 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 319
Query 300 TCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCTGCTTGGCGGCTTCGTATTCCTGA 359
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 320 CCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCGGCTTGGAGGCTTCGTATTCCTGA 379
Query 360 GACTACTTGTCCTAAGGAGATTCAGAAAGCTGCGTCTGAAGCTGCAATGGCGTTTCAGAA 419
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 380 GACTACTTGTCCTAAGGAGATTCAGAAAGCGGCGGCTGAAGCTGCAATGGCGTTTCAGAA 439
Query 420 TGAGACTACGACGGAGGGATCTAAAACTGCGGCggaggcagagg---aggcggcagggga 476
||||| || ||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 440 TGAGAGTATGACGGAGGGATCTAAAACTGCGGCGGAGGTGGAGGCGGAGGCGGCTGGGGA 499
Query 477 gggggtgagggagggggagaggagggcggaggagCAGAATGGTGGTGTGTTTTATATGGA 536
||||| ||||||| |||||||||||| ||||||||||| | | ||||||||||||||||
Sbjct 500 GGGGGAGAGGGAGAGGGAGAGGAGGGTGGAGGAGCAGA--G-TAGTGTGTTTTATATGGA 556
Query 537 TGATGAGGCGCTTTTGGGGATGCCCAACTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 596
||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 557 TGAAGAGGCGGTTTTGGGGATGCCGACCTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 616
Query 597 GCCGCCGCCGGAAGTTGGCTGGAATCATAACGACTTTGACGGAG-TGGGTGACGTGTCAC 655
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 617 GCCGCCGCCGGAAATTGGCTGGAATCATAACGACTTTGACGGAGATGC-TGACGTGTCAC 675
Query 656 TCTGGAGTTTTGACGAGTAA 675
|||||||||| ||||| |||
Sbjct 676 TCTGGAGTTTCGACGATTAA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5