BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52020.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949754 jgi|Araly1|949754|scaffold_801641.1 1099 0.0
Ahg483623 jgi|Araly1|483623|fgenesh2_kg.4__2683__AT2G44940.1 76.8 3e-13
> Ahg949754 jgi|Araly1|949754|scaffold_801641.1
Length=730
Score = 1099 bits (595), Expect = 0.0
Identities = 684/725 (94%), Gaps = 14/725 (2%)
Strand=Plus/Plus
Query 57 TTATGTCGAATAATAATAATTCTCCGACCACCGTGAATCAAGAAACGACGACGTCTCGTG 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 19 TTATGTCGAATAATAATAATTCTCCGACCACCGTGAATCAAGAAACGACGACGTTTCGTG 78
Query 117 AAGTCTCAATCACATTGCCTACTGATCAATCTCCTCAAACCTCACCAGGATCATCTTCTT 176
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 79 AAGTCTCAATCACATTGCCTACTGATCAATCTCCTCAAACCTCACCAGGCTCATCTTCTT 138
Query 177 CTCCTTCACCGAGACCTTCCGGTGGATCACCGGCGAGAAGAACGGCGACTGGATTATCCG 236
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 139 CTCCTTCACCGAGACCTTCCGGTGGATCCCCGGCGAGAAGAACCCCGACTGGATTATCCG 198
Query 237 GCAAGCACTCTATTTTCAGGGGGATTCGACTACGTAACGGAAAATGGGTATCGGAGATTA 296
| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 199 GAAAACACTCTGTTTTCAGGGGAATTCGACTACGTAACGGAAAATGGGTATCGGAGATTC 258
Query 297 GAGAGCCACGTAAAACGACAAGAATTTGGCTCGGGACTTATCCGGTACCGGAGATGGCTG 356
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 259 GAGAGCCACGTAAAACGACAAGAATATGGCTCGGGACTTACCCGGTACCGGAGATGGCTG 318
Query 357 CCGCCGCTTACGACGTGGCTGCGTTAGCTTTAAAAGGACCCGACGCCGTTTTGAATTTTC 416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CCGCCGCTTACGACGTGGCGGCGTTAGCTTTAAAAGGACCCGACGCCGTTTTGAATTTTC 378
Query 417 CTGGTTTAGCTTTGACTTACGTGGCTCCGGTTTCAAACTCTGCTGCGGATATAAGAGCGG 476
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 379 CCGGTTTAGCTTTGACTTACGTGGCTCCGGTTTCAAACTCTGCAGCGGATATAAGAGCGG 438
Query 477 CTGCTAGTAGAGCAGCGGAGATGAAGCAACCGGATCAGGGTGGGGATGAGAAGGTATTGG 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 CTGCTAGTAGAGCAGCGGAGATGAAGCAACCGGATCCGGGTGGGGATGAGAAGGTATTGG 498
Query 537 AACCGGTTCAACCCGGCAAAGAGGAAGAATTAGAAGAAGTGTCGTGTAACTCGTGTTCGT 596
|||||| ||||||||| ||| | |||||| |||||||||||||||| |||| | |
Sbjct 499 AACCGGGTCAACCCGGGAAAAAAGAAGAAGAAGAAGAAGTGTCGTGT---TCGT-T--G- 551
Query 597 TGGAGTTTATGGATGAGGAAGCGATGTTGAATATGCCGACTTTGTTGACGGAGATGGCTG 656
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 552 -G-AGTTTATGGATGAGGAAGCGATGTTGAATATGCCGACTTTGTTGACGGAGATGGCGG 609
Query 657 AAGGGATGTTGATGAGTCCACCGAGAATGATGATA-CATCCGACGATGGAAGATGATTCG 715
||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||
Sbjct 610 AAGGGATGTTGATGAGTCCACCGAGAATGATGATAAC-TCCGACGGTGGAGGATGATTCG 668
Query 716 CCGGAGAATCATGAAGGAGATAATCTTTGGAGTTATAAATGAATCCATTGAAGCTGCTCT 775
|||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||
Sbjct 669 CCGGAGAATCATGAAGGAGATAATCTTTGGAGTTATAAATGAATTCATTTA-GCTG-TCT 726
Query 776 CTTTT 780
||||
Sbjct 727 -TTTT 730
> Ahg483623 jgi|Araly1|483623|fgenesh2_kg.4__2683__AT2G44940.1
Length=996
Score = 76.8 bits (41), Expect = 3e-13
Identities = 97/122 (80%), Gaps = 11/122 (9%)
Strand=Plus/Plus
Query 275 GGAAAATGGGTATCGGAGATTAGAGAGCC-ACGTA-AAACGACAAGAATTTGGCTCGGGA 332
||||||||||||||||||||||||||||| | | | ||| ||||||| ||||||||||
Sbjct 347 GGAAAATGGGTATCGGAGATTAGAGAGCCGAAGAAGAAAT--CAAGAATCTGGCTCGGGA 404
Query 333 CTTATCCGGTACCG--GAGATGGCTGC-CGCCGCTTACGACGTGGCTGCGTTAGCT-TTA 388
| ||||| || | |||||||| || || ||| | |||||||| || ||||| |||
Sbjct 405 CGTATCCA--ACGGCTGAGATGGCAGCTCGA-GCTCATGACGTGGCGGCTTTAGCCATTA 461
Query 389 AA 390
||
Sbjct 462 AA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5