BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52030.2
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495273 jgi|Araly1|495273|fgenesh2_kg.8__1089__AT5G52030.2 1696 0.0
Ahg359775 jgi|Araly1|359775|fgenesh1_pg.C_scaffold_960000001 503 2e-141
> Ahg495273 jgi|Araly1|495273|fgenesh2_kg.8__1089__AT5G52030.2
Length=1341
Score = 1696 bits (918), Expect = 0.0
Identities = 1192/1320 (90%), Gaps = 36/1320 (3%)
Strand=Plus/Plus
Query 71 AATG-AAATCTAAACCAATaaaaaaaCTTCAATCttttttttCTTCACAATTATCGATCC 129
|||| |||||||||||||| |||||| ||||||| |||||| |||||||||||||
Sbjct 40 AATGAAAATCTAAACCAAT-AAAAAA-TTCAATC--TTTTTT-TTCACAATTATCG---- 90
Query 130 AAATCAAGATTTTCTTGATTTGAATTCCTTGCGATGAAACTCCTTCCGAATCCATCACTA 189
||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 91 AAATCAAGAAAATCTTGATTTGAATTCTTTCCGATGAAACTCCTTCCGAATCCACCACTA 150
Query 190 A-C--CTTGTTCCCTTTCTTCACT-CCCTATACTTCAAAGCATATT-TTCAGACCCATCA 244
| | ||| ||||| |||| |||| || || |||||||| | | || |||||||||||||
Sbjct 151 ACCTTCTTCTTCCCCTTCTCCACTACCTTA-ACTTCAAAACCT-TTCTTCAGACCCATCA 208
Query 245 AAGTCTCCGTCTCCGTTCAAACTCCTCCGCCGGATTTCGATTTCCGCAACGACATCGCGT 304
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 209 AAGTCTCCGTCTCCGTTCAAACTCCTCCGCCGGACTTCGATTTCCGAAACGAGATCGCGT 268
Query 305 CGGAATCACGCGCCGCAATCGCGAAAACTTACCCGGAGTTGCTTGACCTCGCTGATAACG 364
|||| |||||||| ||||| || ||||||| ||||||||||||||||||||| |||||||
Sbjct 269 CGGACTCACGCGCTGCAATTGCAAAAACTTTCCCGGAGTTGCTTGACCTCGCCGATAACG 328
Query 365 GGACTCTGATTCTTCTCCAGAAACAGAGTTTCGGTCCTGTTCCAGCTTGGCGCAAAGAGT 424
||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 329 GGACTTTGATTCTTGTCCAGAAACAGAGTTTTGGTCCTGTTCCAGCTTGGCGCAAAGAAT 388
Query 425 TCGTTGAGCCGGAAGCGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAATCTGCTT 484
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 389 TCGTTGAGCCAGAGGCGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAGTCTGCTT 448
Query 485 CCATCGTTGAACGCGTCGTCCGTACTGTGAAGCCTGATAATGTCGCCGTTGAACTCTGTC 544
|| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 449 CCGTCGTTGAACGCGTCGTCCGTACGGTGAAACCTGATAATGTCGCCGTCGAGCTCTGTC 508
Query 545 GTAGCAGGAAAGTCCAATTCTTTATCCAAAC-GAAATTCGGAGCTGGGATTATGTACACT 603
||||||||||||| || |||||||||| | | |||||| |||||||||||||||||||||
Sbjct 509 GTAGCAGGAAAGTTCATTTCTTTATCC-AGCTGAAATTAGGAGCTGGGATTATGTACACT 567
Query 604 TCAAGTGTTGGAGGAGAGGTTGACCAAAACTTAAAATCCGGAGAGTTGTCGTTGACCGGG 663
|| ||||||||| ||||||| |||||||||||||||||||| | |||||||||||| |||
Sbjct 568 TCGAGTGTTGGACGAGAGGTCGACCAAAACTTAAAATCCGGTGTGTTGTCGTTGACAGGG 627
Query 664 ACTGGCTTTCTCGGTGCTGTTGGCCGGAGTTTAGACTTGGGAGGGCAAACTGCGTTGGCA 723
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 628 ACTGGCTTTCTCGGTGCTGTTGGCCGGAGTTTAGACTTGGGAGGCCAAACTGCGTTGGCT 687
Query 724 TTGCGACTTCTATTGGCGGTTTTCTCTTCTAAGTTATCTTCTGTTGCTGACCGCCCTTTC 783
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 TTGCGACTTCTCTTGGCGGTTTTCTCTTCTAAGTTATCTTCTGTTGCTGACCGACCTTTC 747
Query 784 GGGGATGAGTTTCGTGCTGCTCGGAAAGCATCTGAGGAAGTTGGTGCGCAGCTGGTTCTT 843
|| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 748 GGTGATGAGTTTCGTGCAGCTCGAAAAGCGTCTGAGGAAGTTGGTGCGCAGCTAGTTCTT 807
Query 844 GGAGATCGACCCATCGAAATAACTCTCCAAAGGGCTTGGAACTCTTTGAAATGGGGAGAG 903
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 808 GGAGACCGACCCATCGAAATAACACTCCAAAGGGCTTGGAACTCTTTGAAATGGGGAGAG 867
Query 904 AAGTTTAATCTGGTGATGGCTGTGACTCGGGTAATCACATCGTCATCGGGTATATCCGCA 963
|| ||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct 868 AAACTTAATCTGGTGATGGCTGTGACTCGGGCAATTACATCATCATCGGGGATATCCGCA 927
Query 964 GCGGAGCTTAAGGAACAAGAGACCGATGAAAACAGTGGAAGTTTGCAGCTTTACGAACGG 1023
|| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 928 GCCGAGCTTAAGGAACAAGAGACCGATGAAAGCAATGGAAGTTTGCAGCTTTATGAACGG 987
Query 1024 CTAAGTTTCTCATACCCGGCACTCCTAATGCCTCTTATACACGAAAGAGATACCTATCTT 1083
|| |||||||||||||| |||| ||| ||||||| |||||||||||||| ||||||||
Sbjct 988 CTTAGTTTCTCATACCCATCACTTCTACTGCCTCTAATACACGAAAGAGACACCTATCTA 1047
Query 1084 GCTTGGTCATTGAAGAGAAGTAAGGCAGTGAATGGGTGTAAAACAGTGGTGGGAGTGATC 1143
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1048 GCTTGGTCATTGAAGAGAAGTAAGGCAGTGAACGGGTGCAAAACAGTGGTGGGAGTAATC 1107
Query 1144 GGGAAAGGACACATGAATGGTGTCATCTACGCGTTGGTGTCAGACTCTGGGGATCTCCGG 1203
|| ||||||||||||||||||||||||||||| ||||| || || || ||||| ||||||
Sbjct 1108 GGAAAAGGACACATGAATGGTGTCATCTACGCATTGGTATCGGATTCCGGGGACCTCCGG 1167
Query 1204 TTTAGAG-ATTTGGTGGGAAGAGGAGATTCATATAATGGTGGTACTGGTACTACATCGAA 1262
|||| || |||| || |||||| ||||||||| | ||||| | | ||||||||||||
Sbjct 1168 TTTA-AGGATTTAGTAGGAAGAAGAGATTCATCTGATGGT---A--G-TACTACATCGAA 1220
Query 1263 CGGTTGGATTCAAAAGGTTTTAAAGAGCTTCGTAAGAGACACAATTATAGGGTTCTTGCT 1322
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |
Sbjct 1221 CGGTTGGATTCAAAAGGTTTTAAAGAGCCTCGCAAGAGACACAATCATAGGGTTCTTGTT 1280
Query 1323 ATGGGAGTTATATGAACAGTATCT---G---ATGATGA--A-TCAAAACCTTTCATGATA 1373
|||||||||||||||| ||||||| | ||||||| | ||||||||||||||||||
Sbjct 1281 ATGGGAGTTATATGAAGAGTATCTCAAGTTTATGATGATGAATCAAAACCTTTCATGATA 1340
> Ahg359775 jgi|Araly1|359775|fgenesh1_pg.C_scaffold_960000001
Length=705
Score = 503 bits (272), Expect = 2e-141
Identities = 350/386 (91%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 196 TTCCCTTTCTTCACTCCC-TATACTTCAAAGCATATT-TTCAGACCCATCAAA------G 247
|||||||||||||||||| || |||||||| | | || |||| |||||||||| |
Sbjct 1 TTCCCTTTCTTCACTCCCTTA-ACTTCAAAACCT-TTCTTCAAACCCATCAAAGTCTCCG 58
Query 248 TCTCCGTCTCCGTTCAAACTCCTCCGCCGGATTTCGATTTCCGCAACGACATCGCGTCGG 307
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 59 TCTCCGTCTCCGTTCAAACTCCTCCGCCGGACTTCGATTTCCGAAACGAAATCGCGTCGG 118
Query 308 AATCACGCGCCGCAATCGCGAAAACTTACCCGGAGTTGCTTGACCTCGCTGATAACGGGA 367
| |||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 119 ACTCACGCGCTGCAATCGCAAAAACTTTTCCGGAGTTGCTTGACCTCGCCGATAACGGGA 178
Query 368 CTCTGATTCTTCTCCAGAAACAGAGTTTCGGTCCTGTTCCAGCTTGGCGCAAAGAGTTCG 427
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 CTTTGATTCTTGTCCAGAAACAGAGTTTTGGTCCTGTTCCAGCTTGGCGCAAAGAGTTCG 238
Query 428 TTGAGCCGGAAG-CGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAATCTGCTTCC 486
|||||||||| | |||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 239 TTGAGCCGGA-GTCGATTTGGCTTGTGGGTACTTCTCATATCTCGTCGGAGTCTGCTTCC 297
Query 487 ATCGTTGAACGCGTCGTCCGTACTGTGAAGCCTGATAATGTCGCCGTTGAACTCTGTCGT 546
|||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 298 GTCGTTGAACGTGTCGTCCGTACTGTGAAACCTGATAATGTCGCCGTCGAGCTCTGTCGT 357
Query 547 AGCAGGAAAGTCCAATTCTTTATCCA 572
|||||||||||||| |||||||||||
Sbjct 358 AGCAGGAAAGTCCATTTCTTTATCCA 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5