BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52050.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495276 jgi|Araly1|495276|fgenesh2_kg.8__1092__AT5G52050.1 2514 0.0
> Ahg495276 jgi|Araly1|495276|fgenesh2_kg.8__1092__AT5G52050.1
Length=1755
Score = 2514 bits (1361), Expect = 0.0
Identities = 1627/1753 (93%), Gaps = 28/1753 (2%)
Strand=Plus/Plus
Query 38 ctctGTCACACAGATATTGACAAAAACAAAAAGAATGAGTCAATCAAATCGTGTCAGAGA 97
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CTCTCTCTCACAGATATTGACAAAAACAAAAAGAATGAGTCAATCAAATCGTGTCAGAGA 82
Query 98 CGAAGTTACATTACCTTTACTCCAAAAAACCTCTCATCTGAAAAATCACTCCTCTGTTCT 157
|||||||||| ||||||||||||||||| ||||||||| |||||||| | ||
Sbjct 83 CGAAGTTACAACACCTTTACTCCAAAAAAGCTCTCATCTCAAAAATCA-----C---TC- 133
Query 158 CTCTGTTTTCCTAAATGAAGCAATCTCAATCTGCAAAATCTCTTACCCATTGGTCCTCAC 217
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 CTCTGTTTTCATAAATGAAGCAATCTCAATCGGCAAAATCTCTTACCCATTGGTCCTCAC 193
Query 218 TGGTCTCTTCCTCTACGTTCGCTCCTTCGTCTCTCTGTCTTTCCTCGGTGGTCTCGGTGA 277
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 194 AGGTCTCTTCCTCTACGTTCGCTCCTTCGTCTCTCTGTCTTTCCTCGGCGGTCTCGGGGA 253
Query 278 CGCCACTCTCGCCGGTGGCTCCCTCGCCGCCGCATTTGCAAACATCACCGGATACTCTCT 337
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 254 CGCCACTCTCGCCGGTGGCTCCCTCGCCGCCGCATTCGCAAACATCACCGGATATTCTCT 313
Query 338 TTTCTCCGGTTTAACCATGGGCGTTGAGTCTATCTGTTCACAAGCCTTTGGAGCCAGACG 397
||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||
Sbjct 314 TTTCTCCGGTTTAACCATGGGTGTTGAATCTATTTGCTCTCAAGCCTTTGGAGCTAGACG 373
Query 398 CTATAACTACGTCTGCGCGAGTGTCAAGAGAGGAATCATCCTCCTTCTCGTCACTTCTCT 457
||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 374 CTATAACTACGTCCGCGCGACTATCAAGAGAGGAATCATCCTCCTCCTCGTCACTTCTCT 433
Query 458 CCCTGTTACACTTCTTTGGATGAATATGGAGAAGATTCTTCTAATCTTGAAACAGGACAA 517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 434 CCCTGTTACACTTCTTTGGATGAATATGGAGAAGATTCTTTTAATCTTGAAACAGGACAA 493
Query 518 GAAGCTCGCGTCCGAAGCGCACATCTTTTTGCTTTACTCTGTTCCAGATCTTGTCGCTCA 577
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 494 GAAGCTCGCGTCCGAAGCTCATATCTTTTTGCTTTACTCTGTTCCAGATCTTGTTGCTCA 553
Query 578 ATCTTTCTTACACCCATTAAGAGTTTATCTTCGGACTCAGTCAAAGACTCTTCCTTTATC 637
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 554 ATCTTTCTTACACCCATTAAGAGTTTATCTTCGGACACAGTCAAAGACTCTTCCTTTATC 613
Query 638 AATCTGTACAGTGATCGCGAGTTTTCTTCACTTGCCAATCACGTTCTTCCTTGTAAGTTA 697
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 614 AATCTGCACAGTGATCGCCAGTTTTCTTCACTTGCCAATCACGTTCTTCTTTGTAAGTTA 673
Query 698 CCTCGGTTTGGGGATTAAAGGAATCGCTTTGAGTGGTGTTGTGTCTAATTTCAACCTTGT 757
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 674 TCTTGGTTTGGGGATTAAAGGCATCGCCTTGAGTGGTGTTGTGTCTAATTTCAACCTTGT 733
Query 758 CG-CTTTCCTCTTTCTCTACATCTGTTTCTTCGAAGACAAGCTAAGTGTTAATGAGGACG 816
|| |||| ||||| |||||||| |||||||||||||||||||||||| | || ||||| |
Sbjct 734 CGCCTTT-CTCTTCCTCTACATTTGTTTCTTCGAAGACAAGCTAAGTATCAACGAGGAGG 792
Query 817 AGAAGATAACAGAGGAGACATGTGAAGATAGTGTGAGAGAATGGAAGAAACTACTCTGTC 876
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 793 AGAAGATAACAGAGGAGACAAATGAAGATAGTGTGAGAGAATGGAAGAAATTACTCTGTC 852
Query 877 TTGCGATACCAAGTTGTATATCGGTTTGTCTTGAGTGGTGGTGCTATGAGATTATGATTT 936
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 853 TCGCGATACCAAGTTGTATATCGGTTTGTCTCGAGTGGTGGTGCTATGAGATTATGATTT 912
Query 937 TGCTTTGTGGGTTTCTCTTAGACCCTAAAGCAAGTGTTGCTTCAATGGGAATTCTCATCC 996
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 913 TGCTTTGTGGGTTTCTCTTAGACCCTAAAGCAAGCGTTGCTTCAATGGGAATTCTCATCC 972
Query 997 AAATCACTTCTCTTGTGTACATTTTCCCTCATTCCTTGAGTTTAGGAGTCTCCACCCGGG 1056
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 973 AAATCACTTCCCTTGTTTACATTTTCCCTCATTCCTTGAGTTTAGGAGTCTCCACTCGGG 1032
Query 1057 TCGGAAACGAGCTTGGTTCTAACCAGCCAAA-AAGAGCGAGAAGAGCAGCCATTGTTGGA 1115
||||||||||||||||||| ||||||||| | || |||||||||||| ||||||||||||
Sbjct 1033 TCGGAAACGAGCTTGGTTCGAACCAGCCACAGAA-AGCGAGAAGAGCCGCCATTGTTGGA 1091
Query 1116 CTTGGTCTCAGCATCGCCCTAGGGTTTACGGCTTTCGCGTTTACTGTCTCGGTTAGAAAC 1175
||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 1092 CTTGGCCTCAGCATCGCCCTCGGGTTTACGGCTTTTATGTTTACTGTCTCGGTCAGAAAC 1151
Query 1176 ACATGGGCGATGTTTTTCACTGATGACAAAGAAATCATGAAGTTGACTGCCATGGCTCTG 1235
|||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 1152 ACATGGGCAATGTTTTTCACCGATGACAAAGAAATCATGAAGCTGACTGCGATGGCTCTG 1211
Query 1236 CCAATCGTTGGTCTATGTGAGCTCGGGAACTGCCCGCAAACTACGGGATGCGGTGTTCTC 1295
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1212 CCAATCGTTGGCCTTTGCGAGCTCGGGAACTGCCCGCAAACTACCGGATGCGGTGTTCTT 1271
Query 1296 AGAGGCTCCGCGAGGCCGAAGATCGGAGCTAATATTAATGGAGTGGCGTTTTACGCGGTT 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1272 AGAGGCTCCGCGAGGCCGAAGATCGGAGCTAATATTAATGGAGTGGCGTTTTATGTGGTC 1331
Query 1356 GGCATTCCGGTTGGAGCAGTTTTGGCGTTTTGGTTTGGGTTTGGATTTAAGGGACTTTGG 1415
||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1332 GGCATTCCGGTTGGAGCTGTTATGGCGTTTTGGTTTGGGTTCGGATTCAAGGGACTTTGG 1391
Query 1416 CTTGGGATGCTTGCGGCGCAGATCACGTGTGTGATTGGTATGATGGCGGCGACGTGTAGG 1475
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1392 CTTGGGATGCTCGCGGCGCAGATCACGTGTGTGATTGGCATGATGGCGGCGACGTGTAGG 1451
Query 1476 ACCGATTGGGAACTTGAGGCGGAAAGGGCTAAGGTGCTCACAACGGCGGTGGATTGTGGC 1535
||||| |||||||| ||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 1452 ACCGACTGGGAACTGGAGGCGGAAAGGGCTAAGGAGCTCACAACAGCTGTGGATTGTGGC 1511
Query 1536 AGTAGTGACGACGACGCCAAGGAGGATATGGAGGCTGGGATGGTTGATAAGTAGGGAGGA 1595
|| || ||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1512 AGCAG---CGACGAC---AAGGAGGATGTGGAGGCTGGGATGGTTGATAATTAGGGAGGA 1565
Query 1596 ATGAGTCATGAGGAGGTCTTTAACAAAAA----CAAA-TTGACTTTGTTTTGAATTAGTT 1650
|||||||||| | ||||||||||||||| |||| |||||||| |||||||||| ||
Sbjct 1566 ATGAGTCATG-GTTGGTCTTTAACAAAAAAAAACAAAATTGACTTTCTTTTGAATTAATT 1624
Query 1651 GATAACTTTTTTCTTTTATTGAGAAGAGATTCGTTGGAGGATTAATGTAAATTTTGTAGT 1710
||||||||||||||| ||| ||||| || ||| |||| |||||||||||||||||||||
Sbjct 1625 TATAACTTTTTTCTTT-ATTTAGAAGGGAATCGCTGGATGATTAATGTAAATTTTGTAGT 1683
Query 1711 GTAATGATAACACAAT-CTAGAGATTCGTCGTTGTATTCAAGGTTTTTAAATTCATAAGG 1769
|||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||
Sbjct 1684 GTAATGATAACACAATTC-AGAGATTCGTAGTTGTATTCAAGGTTTATAAATTCATAAGT 1742
Query 1770 TCAAATTTTGCTC 1782
|||||||||||||
Sbjct 1743 TCAAATTTTGCTC 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5