BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52055.1

Length=911
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916831 jgi|Araly1|916831|Al_scaffold_0008_1582                    241    8e-63


> Ahg916831 jgi|Araly1|916831|Al_scaffold_0008_1582
Length=264

 Score =  241 bits (130),  Expect = 8e-63
 Identities = 171/190 (90%), Gaps = 5/190 (3%)
 Strand=Plus/Plus

Query  681  GTGTGTAATTGTGGAGGCGCTAAGGAAGCTTTGGAAAAATACGAACAAGAGAAGTGCCTT  740
            ||||||| |||||||   || |||||||||| ||||||||||||| ||||| ||||||||
Sbjct  22   GTGTGTACTTGTGGA---GCAAAGGAAGCTTGGGAAAAATACGAAGAAGAGGAGTGCCTT  78

Query  741  ACGCAGTTTTTACA-CGGTGTGAAGCAATCTCATAGGCAAACAATCGATATGATTTTGAC  799
            |||||||||||  | ||| || || |||||||| ||||||||||||||||||||||||||
Sbjct  79   ACGCAGTTTTT-GATCGGAGTTAATCAATCTCACAGGCAAACAATCGATATGATTTTGAC  137

Query  800  GAAGGAGCCTTTGCCTGATGTATATTGGGCTTTGAAATGCCTAGAGTGTGAGGAATCTCG  859
            |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| 
Sbjct  138  GAAGGAGCCTTTGCCTGATGTATATTGGGCTTTGAAACACCTAGAGTTTGAGGAATCTCA  197

Query  860  AAGACCAATT  869
            ||||||||||
Sbjct  198  AAGACCAATT  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33776904462


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5