BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52060.1 Length=1767 Score E Sequences producing significant alignments: (Bits) Value Ahg357447 jgi|Araly1|357447|fgenesh1_pg.C_scaffold_8001234 721 0.0 > Ahg357447 jgi|Araly1|357447|fgenesh1_pg.C_scaffold_8001234 Length=1050 Score = 721 bits (390), Expect = 0.0 Identities = 481/521 (92%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 504 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGCGGGTATGACTAATGGC 563 |||||||||||||||||||||||||||||||||||||||||||| ||| | | || Sbjct 1 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGC-GGT-CGGC----GGT 54 Query 564 GGTAGAGGTTCCGGCGGCGGTGGTGGTGGCGGCGGCAGGGAGTCAGGCGGTCGTGATTTG 623 |||||||||| | | ||||||||||||||||||||||||| ||||| | Sbjct 55 GGTAGAGGTT----C--C---------GGCGGCGGCAGGGAGTCAGGCGGTCATGATTGG 99 Query 624 GAAATTAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTCGGA 683 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 100 GAAATGAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTTGGA 159 Query 684 CCTCCACCACCACCGATGATCAGAGTTAGAATCAAGTACGGTGCCGTCTACCATGAGATC 743 |||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 160 GCTCCACCACCGCCGTTGATCAGAGTTAGGATCAAGTACGGTGCCGTGTACCATGAGATC 219 Query 744 AATATTAGTCCTCAAGCTTCTTTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 803 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 220 AATATTAGTCCTCAAGCTTCATTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 279 Query 804 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTC 863 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTT 339 Query 864 CTCGATGTTTCGGGAGTGAAAGATAAATCTAAGATGGTGCTTATAGAAGACCCGCTTAGC 923 ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||| Sbjct 340 CTCGATGTTTCGGGAGTGAAAGATAAATCCAAGATGGTGCTTATCGAAGATCCGATTAGC 399 Query 924 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCTAAAGCG 983 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 400 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCGAAAGCG 459 Query 984 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 1024 ||||||||||||||||||||||||||||||||||||||||| Sbjct 460 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 500 Score = 701 bits (379), Expect = 0.0 Identities = 458/494 (93%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 1041 ATGGTAACTAAAAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 1100 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 ATGGTAATTAAGAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 627 Query 1101 CTGATGAATGAGTTGATTAAGTTGGATGCGATTGTAGCTGAAGGAGATGTCAAGTTACAA 1160 |||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| Sbjct 628 TTGATGAATGAGTTGATAAAGTTGGATGCGATTGTGGCTGAAGGAGATGTGAAGCTACAA 687 Query 1161 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTGGAAACACTCGATGCCTTGAAGGTG 1220 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 688 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTCGAAACACTCGATGTCTTGAAGGTG 747 Query 1221 AAAAACTCCATGGCTAATGGGCAACAGAAACAGTCAAGTACTGCTCAGAGACTTGCACCG 1280 ||| ||||| ||||||||||||||||||| || ||||||| ||||||||||| Sbjct 748 --AAA----ATGGCAAATGGGCAACAGAAACAGT-TAG--GTGCTCAGCGACTTGCACCG 798 Query 1281 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 858 Query 1341 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCTAGGAATTCAGGG 1400 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 859 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCAAGGAATTCAGGG 918 Query 1401 GAAGGACCATTTGTGTTAGATTCTTCTGCTAAATGGGAAACATTCGATCATCATCCCGTG 1460 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | | Sbjct 919 TCAGGACCATTTGTGTTAGATTCTTCTACTAAATGGGAAACATTTGATCATCATCCTGCG 978 Query 1461 ACGCCATTGAGCTCGACTACTGCGAAA-AAT-AACGCGATCCCGCCCAGGTTTAATTGGG 1518 ||||||||||| ||| ||||||| ||| ||| || ||||||||||||||||| ||||||| Sbjct 979 ACGCCATTGAGTTCGGCTACTGC-AAATAATCAA-GCGATCCCGCCCAGGTTCAATTGGG 1036 Query 1519 AATTCTTTGATTGA 1532 |||||||||||||| Sbjct 1037 AATTCTTTGATTGA 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66315116545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5