BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52060.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357447 jgi|Araly1|357447|fgenesh1_pg.C_scaffold_8001234 721 0.0
> Ahg357447 jgi|Araly1|357447|fgenesh1_pg.C_scaffold_8001234
Length=1050
Score = 721 bits (390), Expect = 0.0
Identities = 481/521 (92%), Gaps = 21/521 (4%)
Strand=Plus/Plus
Query 504 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGCGGGTATGACTAATGGC 563
|||||||||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 1 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGC-GGT-CGGC----GGT 54
Query 564 GGTAGAGGTTCCGGCGGCGGTGGTGGTGGCGGCGGCAGGGAGTCAGGCGGTCGTGATTTG 623
|||||||||| | | ||||||||||||||||||||||||| ||||| |
Sbjct 55 GGTAGAGGTT----C--C---------GGCGGCGGCAGGGAGTCAGGCGGTCATGATTGG 99
Query 624 GAAATTAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTCGGA 683
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 100 GAAATGAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTTGGA 159
Query 684 CCTCCACCACCACCGATGATCAGAGTTAGAATCAAGTACGGTGCCGTCTACCATGAGATC 743
|||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 160 GCTCCACCACCGCCGTTGATCAGAGTTAGGATCAAGTACGGTGCCGTGTACCATGAGATC 219
Query 744 AATATTAGTCCTCAAGCTTCTTTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 803
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 220 AATATTAGTCCTCAAGCTTCATTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 279
Query 804 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTC 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTT 339
Query 864 CTCGATGTTTCGGGAGTGAAAGATAAATCTAAGATGGTGCTTATAGAAGACCCGCTTAGC 923
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct 340 CTCGATGTTTCGGGAGTGAAAGATAAATCCAAGATGGTGCTTATCGAAGATCCGATTAGC 399
Query 924 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCTAAAGCG 983
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCGAAAGCG 459
Query 984 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 1024
|||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 500
Score = 701 bits (379), Expect = 0.0
Identities = 458/494 (93%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 1041 ATGGTAACTAAAAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 1100
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATGGTAATTAAGAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 627
Query 1101 CTGATGAATGAGTTGATTAAGTTGGATGCGATTGTAGCTGAAGGAGATGTCAAGTTACAA 1160
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 628 TTGATGAATGAGTTGATAAAGTTGGATGCGATTGTGGCTGAAGGAGATGTGAAGCTACAA 687
Query 1161 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTGGAAACACTCGATGCCTTGAAGGTG 1220
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 688 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTCGAAACACTCGATGTCTTGAAGGTG 747
Query 1221 AAAAACTCCATGGCTAATGGGCAACAGAAACAGTCAAGTACTGCTCAGAGACTTGCACCG 1280
||| ||||| ||||||||||||||||||| || ||||||| |||||||||||
Sbjct 748 --AAA----ATGGCAAATGGGCAACAGAAACAGT-TAG--GTGCTCAGCGACTTGCACCG 798
Query 1281 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 858
Query 1341 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCTAGGAATTCAGGG 1400
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 859 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCAAGGAATTCAGGG 918
Query 1401 GAAGGACCATTTGTGTTAGATTCTTCTGCTAAATGGGAAACATTCGATCATCATCCCGTG 1460
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
Sbjct 919 TCAGGACCATTTGTGTTAGATTCTTCTACTAAATGGGAAACATTTGATCATCATCCTGCG 978
Query 1461 ACGCCATTGAGCTCGACTACTGCGAAA-AAT-AACGCGATCCCGCCCAGGTTTAATTGGG 1518
||||||||||| ||| ||||||| ||| ||| || ||||||||||||||||| |||||||
Sbjct 979 ACGCCATTGAGTTCGGCTACTGC-AAATAATCAA-GCGATCCCGCCCAGGTTCAATTGGG 1036
Query 1519 AATTCTTTGATTGA 1532
||||||||||||||
Sbjct 1037 AATTCTTTGATTGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5