BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52070.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949763 jgi|Araly1|949763|scaffold_801650.1 1164 0.0
> Ahg949763 jgi|Araly1|949763|scaffold_801650.1
Length=854
Score = 1164 bits (630), Expect = 0.0
Identities = 783/856 (91%), Gaps = 13/856 (2%)
Strand=Plus/Plus
Query 45 TCTCATCTTGGaaaaaaaaaTGACTCAAATCAATTTGCCCTTCCAAATTGGGCAAATTGT 104
|||| |||||| ||||||||||||||| ||||||||| |||||| || ||||||||
Sbjct 4 TCTCCTCTTGG--TAAAAAATGACTCAAACCAATTTGCCATTCCAAGTTAATCAAATTGT 61
Query 105 GGAGGTTAAATCTTTTATCAGAGGATACCGTGGAGCTTGGTTTCGATGCAAGATATTGGA 164
|||||| ||||| || |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 62 GGAGGTGAAATCCTTCATCAAAGGATACCGCGGAGCTTGGTTTCGATGCAAGATATTGGA 121
Query 165 TATAAGCAATGAAAAGGGTGAACTAAGATACAAGTTTAAGTATCTCGACTTTCCAGATGA 224
||| | ||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 TATGACCAATGAAAATGGAGAACTAAGATACAAGTTTAAGTATCTTGACTTTCCAGATGA 181
Query 225 ACCTTTAGATAATGCACTGGTCTTTGAAACACCTAAAGGTGGGACAGAAAGTCAGCTAAT 284
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 182 ACCGTTAGATAATGCACTAGTCTTTGAAACACCTAAAGGTGGGACGGAAAGTCAGCTAAT 241
Query 285 GCTTCGTCCAAAATATCCACCACTTTATCTTGAAAGTGAATATCTTAATCTCGAGAGTGA 344
||||||||| | ||||||||||| ||||| ||||||||||||| ||||||||||| |||
Sbjct 242 GCTTCGTCCCACATATCCACCACATTATCATGAAAGTGAATATGTTAATCTCGAGGGTG- 300
Query 345 CAACGTAGAACCTCTTGTCGTCGTTCATGATTCTTGGAAAGTTGGAGATTTAGTTGATTG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 --ACGTAGAACCTCTTGTCGTCGTTCATGATTCTTGGAAAGTTGGAGATTTAGTTGATTG 358
Query 405 GTTGAGAGATGACATTTATTGGTCTGGAGAAATTGTGGAAATGAGAGGTAGGAGAGCATG 464
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 359 GTTGAGAGATGAGATTTATTGGTCTGGAGAAATTGTGGCAATGAAAGGTAGGAGATCATG 418
Query 465 TCAGATCGAATTGCTTCCTAAACCAGAAGGG-GAAGGAGATAGTT-ATCAAGGTTTGTGT 522
|||||| |||||||| ||||||||||| ||| |||||||| ||| ||| ||||||||||
Sbjct 419 TCAGATTGAATTGCTACCTAAACCAGA-GGGTGAAGGAGAG-GTTTATCTAGGTTTGTGT 476
Query 523 AAGAATTTGCGTCCACGGTTGGATTGGTCAGTGGAAGATGGTTGGAAAGTGCCTTGCACT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 AAGAATTTGCGTCCACGGTTGGATTGGTCAGTGGAAGATGGTTGGAAAGTGCCTTGCTCT 536
Query 583 GCGGATGGGAAAAAATGTGCTAAGATCGTGACATCTAAGAAAGAAGATGGTGGAATTGGA 642
| ||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 537 GTGGATGGGCAAAAATCTGCTAAGATCGTGACATCTAAGAATGAAGATGAAGGAATTGCA 596
Query 643 GATGAATGTGAAACTGCAAAAGAGCAAACGAAGAAAACCACAAAGCAAGTGGAAGGCAAT 702
|||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||
Sbjct 597 GATGAATGCGAAACTGAAAAAGAGCAAACAAAGAAAGCCACAAAGCAAGTGGAAGGCAAT 656
Query 703 GAAGGTCTTAGGCTTAATATTATGGAATCGGA-TGGAATTGAAGCTGCTGTGTTGGACAT 761
|||||||||||||||||||| |||||||| || | ||||||||||||||| ||||||||
Sbjct 657 GAAGGTCTTAGGCTTAATATCATGGAATCAGAATC-AATTGAAGCTGCTGTTTTGGACAT 715
Query 762 AGAAGAGCTTATCGTTCGAATTGATTGGTTTAAAGGAATATTAAAGCCGGATGTTGGAGA 821
|||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 716 AGAAGAGCTTATTGTTCGACTTGATTGGCTTAAAGGAAAATTAAAGCCGGATGTTGGAGA 775
Query 822 AGGTGCAAAATGTTCTTGGAAGTATGAAGATTACCGCCCATCTTCCTCTGGAATG-TGAA 880
|||||||||| || ||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 776 AGGTGCAAAACCTTATTGGAAGTATGAAGATTACCGCCCATCTTCCTCGGGAA-GATGAA 834
Query 881 TTCATAATGGTAGTAG 896
||| ||||||||||||
Sbjct 835 TTCGTAATGGTAGTAG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5