BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52110.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495283 jgi|Araly1|495283|fgenesh2_kg.8__1099__AT5G52110.1 1456 0.0
> Ahg495283 jgi|Araly1|495283|fgenesh2_kg.8__1099__AT5G52110.1
Length=1003
Score = 1456 bits (788), Expect = 0.0
Identities = 943/1016 (93%), Gaps = 17/1016 (2%)
Strand=Plus/Plus
Query 49 AGAGATGAGTATTCAAATTTGTAATTTCCCGTTCCATCCTAAATTCGCGCTACAACCTCG 108
||| |||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 AGAAATGAGTCTTCGAATTTGTAATTTCCCGTTCCATCCAAAATTCGCTCTACAACCTCG 60
Query 109 CGCCCAAAGGTCAACACGAATCTTCGCTCGTACAGAGAACGATTCTCCACAATCAAAGAC 168
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 CGCCCAAAGGTCAACACGAATCTTCGCTCGTACAGAGAACGATTCTCCACAA-C--A-AC 116
Query 169 ATCTGATCAACAACTCAATCTCTCTGTTCTTCGCTTCACTTTTGGAATTCCTGGGTTTGA 228
| | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 117 A----A-CAACAACTCAATCTCTCTGTTCTTCGCTTCACTTTCGGAATTCCTGGGCTTGA 171
Query 229 CGAATCTTATCTACCGAGATGGATCGGGTACGGCTTTGGATCACTTCTTCTTCTTAACCA 288
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 172 CGAATCTTATCTGCCGAGATGGATCGGGTACGGGTTTGGATCACTTCTTCTTCTTAACCA 231
Query 289 CTTCTCAGCTTCTGCTCCAATCAGTGAATCTCAAATGAGATCAGAGGCTTTGGGTTTATC 348
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 232 CTTCTCAGCATCTGCTCCAATCAGTGAATCTCAAATGAGATCAGAGGCTTTGGGATTATC 291
Query 349 ACTAGCTGCATTTTCAATAGCTTTACCTTACATTGGAAAATTCCTTAAGGGTTCTGTAGT 408
||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 292 ACTTGCTGCGTTTTCAATAGCTTTACCTTACATTGGTAAATTCCTTAAGGGCTCTGTAGT 351
Query 409 GGAGCAGAGAAGTCTCCCTGAAGAAGGAGAGCAGGTTTTTGTGATATCATCAAATATTGG 468
||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 GGAGCAGAGAACTCTACCTGAAGAAGGAGAGCAGATTTTTGTGATATCATCAAATATTGG 411
Query 469 AGATTCTTTGAAAGAGGATTTAGCATGGGCAACGTATGTTTTGTTGAGGAATACAAGTAC 528
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 412 AGATTCTTTGAAGGAGGATTTAGCGTGGGCAACGTATGTTTTGTTGAGGAATACAAGTAC 471
Query 529 TATAGCTGTGTTGATATCGGTTCAAGGCGAGCTTTGTGTTCGCGGGTACTGGAATTGTCC 588
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 472 TATAGCTGTGTTGATATCGGTTCAAGGTGAGCTTTGTGTTCGCGGGTACTGGAATTGTCC 531
Query 589 AGATCAAATGTCAAAGGCTCAACTTCATGATTGGTTTAAGAAAAAAGTGGATGAGATTGG 648
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 532 AGATCAGATGTCAAAGGCTCAACTACATGATTGGTTTACGAAAAAAGTGGATAAGATTGG 591
Query 649 CTTGGCTGATGTGAAGGAGACCCTTTATTTCCCTCAGTATGCAGGTTCTGCACTATCTTT 708
|||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||
Sbjct 592 CTTGGCTGATGTGAAGGACACCCTTTACTTCCCTCAATATGCAGGTTCTGCACAATCTTG 651
Query 709 GGATATACTTCCTGATGGGACGCGTTCTCTTTTTGTGCAACCTCTCGTACAAAATACAAA 768
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 652 GGATATTCTTCCCGATGGGACGCGTTCTCTTTTTGTGCAACCTCTCGTACAAAATATAAA 711
Query 769 TGAACCGCAGAAAGTGAATGGGTTTTTGCTGGTGGCCTCTACTGCTGGATATGCATATAG 828
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 TGAACCGCAGAAAATGGATGGGTTTTTGCTGGTGGCTTCTACTGCTGGATATGCATATAG 771
Query 829 CGATAAAGATAGAGCCTGGATTGGAGCTATGGCTGAGAAATTCAGAGGTTAGATTGTTCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CGATAAAGATAGAGCCTGGATTGGAGCTATGGCTGAGAAATTCAGAGGTTAGATTGTTCC 831
Query 889 CATGGATTAAAGGATTTGTTGCTT--ATTTTGTTCTGTTTTGGTGGGCTTC-GTTGAAGT 945
||||||| |||| | || |||||| ||||| |||| |||| ||||| ||| ||| ||||
Sbjct 832 CATGGATCAAAG-ACTTCTTGCTTCCATTTT-TTCTCTTTTTGTGGGTTTCAGTT-AAGT 888
Query 946 TAAAATTGTGCAGTCTCAACTTTGACAGACTTTTCATCTTGGTAATTATGCTTCGTCGCT 1005
| ||| ||||||||| ||||||||||||||||| |||| ||| |||||||||| | ||
Sbjct 889 TGAAACTGTGCAGTCACAACTTTGACAGACTTT-CATCGCAGTATTTATGCTTCGCCACT 947
Query 1006 GTTCCATCTGAATATGGGAGGAATTTGTACATTTC-ATAGAACGTTAATTGGACCA 1060
|||||||||||||||||| ||| |||| |||||| |||||| |||||||||||||
Sbjct 948 GTTCCATCTGAATATGGGTGGACTTTGCACATTTTTATAGAATGTTAATTGGACCA 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5