BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52130.1

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949768 jgi|Araly1|949768|scaffold_801655.1                        276    1e-73


> Ahg949768 jgi|Araly1|949768|scaffold_801655.1
Length=656

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 289/351 (82%), Gaps = 32/351 (9%)
 Strand=Plus/Plus

Query  94   GTCGCAAGAGAATGGCAAAATATGGAA-A--ATTCTCTAATCTCCTTAAGCGATGACGAA  150
            |||||||||||||||||||||||| || |  |||||||||||||||||||||||||||| 
Sbjct  153  GTCGCAAGAGAATGGCAAAATATGCAAGATTATTCTCTAATCTCCTTAAGCGATGACGAG  212

Query  151  AAGTTTGCTAAATCGCTACAAGAACAAGAATTGAACCGTTCGACATCTACCCAGCAACAA  210
            || ||||| |||||  |||||||||||||||||||||||||| | ||  || | ||||||
Sbjct  213  AATTTTGCCAAATCATTACAAGAACAAGAATTGAACCGTTCGTCGTC--CC-ATCAACAA  269

Query  211  AGTCATGTT---GGCAGTTCTTCTCA--TGATTCATCTGACGACAGTACTCATTCTCTTC  265
            |||||||||   ||||||| | ||||  ||||||||||||| |  ||  || ||||| ||
Sbjct  270  AGTCATGTTCATGGCAGTT-T-CTCAGATGATTCATCTGAC-A--GTTTTCTTTCTCCTC  324

Query  266  CTCCTGATGTT-A-AC-ATCGA-TCCTGAT-AATATGACTTA-TGAAGAGAATCGATCGG  319
            ||||||||||| | |  || || |  |||  ||  ||| | | | | |||||||||| ||
Sbjct  325  CTCCTGATGTTGATAATAT-GAGTTATGAGGAAC-TGAATCAATTAGGAGAATCGATTGG  382

Query  320  AGCAGTCAACAAAGGATTGTCGAAGAGGAGAATTGGCCAAATACCAACTCATAAATTT--  377
             || |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||  
Sbjct  383  GGCGGTCAACAAAGGATTGTCGAAGACGAGAATTTGCCAAATACCAACCCATAAATTTCG  442

Query  378  -AC--C-TCGTCGTCTAGAACGAGA-AATCTTGTATCCGAAAAAACTCAGT  423
             ||  | |||||||||||||||| | ||||  |||||||||||||||||||
Sbjct  443  CACTGCCTCGTCGTCTAGAACGA-ACAATCACGTATCCGAAAAAACTCAGT  492


 Score =  111 bits (60),  Expect = 4e-24
 Identities = 68/72 (94%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  1   ATGCGAGTGATGATGCAATCGAAACAAATGGAAATGGATGAAGCCTTTGCGGCATCTTTG  60
           ||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  21  ATGCGTGTGAGGATGCAATCGAATCAGATGGAAATGGATGAAGCCTTTGCGGCATCTTTG  80

Query  61  CTGTATGATGAT  72
           ||||||||||||
Sbjct  81  CTGTATGATGAT  92



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17856815652


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5