BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52140.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1 1218 0.0
Ahg483242 jgi|Araly1|483242|fgenesh2_kg.4__2302__AT5G52140.1 861 0.0
> Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1
Length=884
Score = 1218 bits (659), Expect = 0.0
Identities = 812/887 (92%), Gaps = 6/887 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCGGCTTGTAAACCAGTCGTCTGTCGATGAAAATATTGCAGTCTATTTACAAAAC 60
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1 ATGTCTCGGCTTGTAAACCAGTCGTCTCTCGATGAAAATATTGCAATCTATTTACAATAT 60
Query 61 GAGTTATCAGAACTGACGGTTAATGATTATGCTATTGGTCGGGAGATACAACAACAATAT 120
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 GAGTTATCAGAACTGACGGTTAATGATTATGTTATTGGTCGGGAGATTCAACAACAATAT 120
Query 121 CAAAATAAATCGATATGTAACGATGCTGCTATTGCTTTGGAGATTCAGAAAGAAGAAGAA 180
|||||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||
Sbjct 121 CAAAATAAATTTATATGTAATGATGCTGCTATTGCTTTAGAGATGCAGCAAGAAGAAGTT 180
Query 181 GCTTGTGTACACTCTTGCTTACATGACGATGAAGGATTGGCAAGAACGTTGCAAGACTTG 240
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GCTTGTGTGCACTCTTGCCTACATGATGATGAAGGATTGGCAAGAACGTTGCAAGACTTG 240
Query 241 GAGGCTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACTTGCAAGATATTTGCAAGAA 300
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GAGGGTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACTTGCTAGATATTTGCAAGAA 300
Query 301 CATGATGAATTGGCAAATAATACGGAAGATGATATCCAAGAAACACATCACCATCAGTAC 360
|| ||||||| ||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 301 CAAGATGAATCGGCAAATAATACGGACGATGATATTCAAGAAACCCATCACCATCATTAC 360
Query 361 CACCCCATGCAAGTGAATCGTTCATACATACCTCAACGTGATGCTCCATCGTCTAGTAGA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 CAACCCATGCAAGTGAATCGTTCATACATACCTCAACGTGATGCTCCATCGACTAGTAGA 420
Query 421 GCCATTTTTCACTATGACGATGGTGAGAACTTCTCGGGTCGTTATACGCATACTCATAGT 480
||| ||||| |||||||||||||||||||||||||||| | | |||| |||| || ||||
Sbjct 421 GCCTTTTTTGACTATGACGATGGTGAGAACTTCTCGGGCCATCATACCCATATTCGTAGT 480
Query 481 CCTTC-AAGCATTTCCCACAATCCTACTGATGATGAGAACAATGATCCCGAAAATATGAC 539
||||| || || |||||||||||| | ||| ||||||||| |||||||| || ||||||
Sbjct 481 CCTTCTAAT-ATCTCCCACAATCCTCCAGATAATGAGAACATTGATCCCGCAAGTATGAC 539
Query 540 GTATGAGGAATTAACTGAGTTAGGAGACTCGGTTGGAGATGTCGGTAAAGGATTATCGCA 599
||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 540 GTATGAGGAATTATCTGAATTAGAAGACTCGATTGGAGATGTCAGTAAAGGATTATCGCA 599
Query 600 AGAGAGGATCTCTAGATTG-CGGACTCATAAGTATGGTACTAAAACCAAATCTTGGTACT 658
|||||| |||||| |||| || ||||||||||||||||||||||||||| |||||| ||
Sbjct 600 AGAGAGAATCTCTCGATTATCG-ACTCATAAGTATGGTACTAAAACCAAAACTTGGTCCT 658
Query 659 GTTTGCATATGAAAAAGAAGTTTGTTGCCGATGATTCTCAGTGTTCGATATGTCTAA-TG 717
||| || || |||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 659 GTTGGCTTAAGAAAAAGAAGTTTGTTGCCGATGATTCTCAGTGTTCGATATG-CTTAGTG 717
Query 718 GAGTATGCAAAAGGAGATAAGATTACAACTTTGCCATGTAAACATATCTATCATAAAGAT 777
|| ||||| | ||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 718 GACTATGCGGAGGGAGATAAGATCACAACTTTGCCATGTAAACATATTTACCATAAAGAT 777
Query 778 TGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCATTTGCAAGGCCGAGGTTTAT 837
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 778 TGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCGTTTGCAAAGCCGAGGTTTAT 837
Query 838 CCATAATACTAAATCTCGTCGGACCAACGATCTATAATGTTCGGTTT 884
|||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 838 CCATAATACTAAATTTCGTCGGACCAACAATCTATAATGCTCGGTTT 884
> Ahg483242 jgi|Araly1|483242|fgenesh2_kg.4__2302__AT5G52140.1
Length=749
Score = 861 bits (466), Expect = 0.0
Identities = 614/686 (90%), Gaps = 7/686 (1%)
Strand=Plus/Plus
Query 162 GATTCAGAAAGAAGAAGAAGCTTGTGTACACTCTTGCTTACATGACGATGAAGGATTGGC 221
||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 69 GATTCAGCAAGACGAAGAAGCTTGTGTGTACTCTTGCTTACAT---GATGAAGGATTGGC 125
Query 222 AAGAACGTTGCAAGACTTGGAGGCTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACT 281
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 126 AAGAACGTTGCAAGACTTGGAGGGTAAACTGCAGCCCTCTCTAAGCGATGATGAAATACT 185
Query 282 TGCAAGATATTTGCAAGAACATGATGAATTGGCAAATAATACGGA-AGATGATATCCAAG 340
||| ||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||
Sbjct 186 TGCTAGATATTTGCAAGAACAAGATGAATCGGCAAATAATACGGACA-ATGATATCCAAG 244
Query 341 AAACACATCACCATCAGTACCACCCCATGCAAGTGAATCGTTCATACATACCTCAACGTG 400
|||| ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 245 AAACCCATCACCGTCAGTACCAACCCATGCAAGTAAATCGTTCAAACATACCTCAACGTG 304
Query 401 ATGCTCC-ATCGTCTAGTAGAGCCATTTTTCACTATGACGATGGTGAGAACTTCTCGGGT 459
|||| || |||| |||||| |||| |||||||||| |||| ||||||||||||||||| |
Sbjct 305 ATGC-CCTATCGACTAGTAAAGCCTTTTTTCACTACGACGGTGGTGAGAACTTCTCGGAT 363
Query 460 CGTTATACGCATACTCATAGTCCTTCAAGCATTTCCCACAATCCTACTGATGATGAGAAC 519
| ||||||||||| || ||||||||||| || |||||||||||| | ||| ||||||||
Sbjct 364 CATTATACGCATAGTCGTAGTCCTTCAAATATCTCCCACAATCCTCCCGATAATGAGAAC 423
Query 520 AATGATCCCGAAAATATGACGTATGAGGAATTAACTGAGTTAGGAGACTCGGTTGGAGAT 579
| |||||||| || |||||||||||||||| || |||| |||| |||||| ||||||||
Sbjct 424 ATTGATCCCGCAAGTATGACGTATGAGGAAATATCTGAATTAGAAGACTCCATTGGAGAT 483
Query 580 GTCGGTAAAGGATTATCGCAAGAGAGGATCTCTAGATTGCGGACTCATAAGTATGGTACT 639
|| ||||||||||||||||| | | ||||||| |||||||||||||||||||||||| |
Sbjct 484 TTCAGTAAAGGATTATCGCAAAAAATGATCTCTCGATTGCGGACTCATAAGTATGGTATT 543
Query 640 AAAACCAAATCTTGGTACTGTTTGCATATGAAAAAGAAGTTTGTTGCCGATGATTCTCAG 699
|||||||| |||||| ||||| || || |||||| ||||||||||||||||||||||||
Sbjct 544 CAAACCAAAACTTGGTGCTGTTGGCTTAAGAAAAAAAAGTTTGTTGCCGATGATTCTCAG 603
Query 700 TGTTCGATATGTCTAATGGAGTATGCAAAAGGAGATAAGATTACAACTTTGCCATGTAAA 759
||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 TGTTCAATATGCCTAGTGGAGTATGCAAAGGGAGATAAGATTACAACTTTGCCATGTAAA 663
Query 760 CATATCTATCATAAAGATTGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCATT 819
||| | || ||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 664 CATGTTTACCATAAGGATTGCATTTCACGATGGCTGAAACAAAACAAGGTATGCTGCGTT 723
Query 820 TGCAAGGCCGAGGTTTATCCATAATA 845
||||| |||| |||||||||||||||
Sbjct 724 TGCAAAGCCGTGGTTTATCCATAATA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5