BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52145.1 Length=291 Score E Sequences producing significant alignments: (Bits) Value Ahg916842 jgi|Araly1|916842|Al_scaffold_0008_1593 257 3e-68 > Ahg916842 jgi|Araly1|916842|Al_scaffold_0008_1593 Length=297 Score = 257 bits (139), Expect = 3e-68 Identities = 249/297 (84%), Gaps = 27/297 (9%) Strand=Plus/Plus Query 7 AAATCCGGTTCTATCATTACCGTCCTCTTCATCGTCTTCATAGTTATCTCT-AAA---CA 62 ||| || ||||||||||||||||||||||| || ||||| ||||||||||| ||| || Sbjct 16 AAACCCAGTTCTATCATTACCGTCCTCTTCGTCTTCTTCTTAGTTATCTCTGAAATGCCA 75 Query 63 -A-AT---A--GAAAGATAGTGATTGCTTGAAAGAATATGGAGGTAAGGTAATATATGTT 115 | || | | |||||||||||||||||||||||||||||||| | | | ||| Sbjct 76 GAGATAAAAGCGCAAGATAGTGATTGCTTGAAAGAATATGGAGGT--G--A-T----GTT 126 Query 116 GGTTTCCCCTGGCCTTTTGTGCAATTTTGATATTTCTGTCA-TACTGTTATATAAAGTGT 174 |||||||||| ||| |||||||||||||||||| |||| || ||||||||||||||| Sbjct 127 GGTTTCCCCT----TTT-GTGCAATTTTGATATTTCCGTCAGTA-TGTTATATAAAGTGT 180 Query 175 CACAAAGACAAGGGGGCTGATGGCGGAAGATGCCAATAGGGACAGGAAGAAGGTCATACT 234 | | |||||||||||||| | ||||||||||||||| | ||| ||||||| ||||||| | Sbjct 181 CGCCAAGACAAGGGGGCTAAAGGCGGAAGATGCCAACACGGAGAGGAAGACGGTCATATT 240 Query 235 AAGTTGACGTGCTTATGCGACTATTGTGACTCTTCGCCCTACCTGATCAAACTCTAA 291 ||||| |||||||| |||||||||||| |||| ||||||||||| |||||||||||| Sbjct 241 AAGTTCACGTGCTTTTGCGACTATTGTAACTCGTCGCCCTACCTAATCAAACTCTAA 297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10187542263 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5