BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52145.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916842 jgi|Araly1|916842|Al_scaffold_0008_1593 257 3e-68
> Ahg916842 jgi|Araly1|916842|Al_scaffold_0008_1593
Length=297
Score = 257 bits (139), Expect = 3e-68
Identities = 249/297 (84%), Gaps = 27/297 (9%)
Strand=Plus/Plus
Query 7 AAATCCGGTTCTATCATTACCGTCCTCTTCATCGTCTTCATAGTTATCTCT-AAA---CA 62
||| || ||||||||||||||||||||||| || ||||| ||||||||||| ||| ||
Sbjct 16 AAACCCAGTTCTATCATTACCGTCCTCTTCGTCTTCTTCTTAGTTATCTCTGAAATGCCA 75
Query 63 -A-AT---A--GAAAGATAGTGATTGCTTGAAAGAATATGGAGGTAAGGTAATATATGTT 115
| || | | |||||||||||||||||||||||||||||||| | | | |||
Sbjct 76 GAGATAAAAGCGCAAGATAGTGATTGCTTGAAAGAATATGGAGGT--G--A-T----GTT 126
Query 116 GGTTTCCCCTGGCCTTTTGTGCAATTTTGATATTTCTGTCA-TACTGTTATATAAAGTGT 174
|||||||||| ||| |||||||||||||||||| |||| || |||||||||||||||
Sbjct 127 GGTTTCCCCT----TTT-GTGCAATTTTGATATTTCCGTCAGTA-TGTTATATAAAGTGT 180
Query 175 CACAAAGACAAGGGGGCTGATGGCGGAAGATGCCAATAGGGACAGGAAGAAGGTCATACT 234
| | |||||||||||||| | ||||||||||||||| | ||| ||||||| ||||||| |
Sbjct 181 CGCCAAGACAAGGGGGCTAAAGGCGGAAGATGCCAACACGGAGAGGAAGACGGTCATATT 240
Query 235 AAGTTGACGTGCTTATGCGACTATTGTGACTCTTCGCCCTACCTGATCAAACTCTAA 291
||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 241 AAGTTCACGTGCTTTTGCGACTATTGTAACTCGTCGCCCTACCTAATCAAACTCTAA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5