BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52150.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495285 jgi|Araly1|495285|fgenesh2_kg.8__1101__AT5G52150.1 854 0.0
> Ahg495285 jgi|Araly1|495285|fgenesh2_kg.8__1101__AT5G52150.1
Length=611
Score = 854 bits (462), Expect = 0.0
Identities = 567/615 (92%), Gaps = 17/615 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCAAT-CTCTAAATCAGGATGCCATTGATGAAGCAATTGCA-T-----TAGATTT 53
|||||||||| || ||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1 ATGTCTCAATCCT-TAAATCAGGCGGCCATTGATGAAGCAATTGCACTAGGAATAGATTT 59
Query 54 GCAGTTTGATGATTTATACCTAACGATTAACGACCAG--T-ATATCGCATTGAAAATCAA 110
||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 60 GCAGTTTGATGATTTATACCTAACGATTAACGACCCGGATGATATCGCATTGAAAATCAA 119
Query 111 ACAAAACGAAGAAGCGATGTCCATACAAGCTGATGAAGATTATGCAAAAATGTTGCAATT 170
|||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 ACAAAAAGAAGAAGCGCTTTCCATACAAGCTGATGAAGAATATGCAAAAATGTTGCAATT 179
Query 171 ACAGGAAGATGAAGAAACAGCAAAAACCTTGCATGCCATGGAAGAAAATCCTCCGAACAT 230
|||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||
Sbjct 180 ACAGGAAGATGAAGAATTGGCAAAAAATTTGCATGCCATGGAAGAAAACCCTCCAAACAT 239
Query 231 TCCTCAGTCC-GATGTTCCTTCGACTAGTAG-GGACACAAGTGGCCTTAACGATGGTGAT 288
||||||| || |||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 240 TCCTCAG-CCTGATGTTCCTTCGACTAGTAGAGGA-ACTAGTGGCCTTAACGATGGTGAG 297
Query 289 AGGCGTCAGGATCAGCCTACCCTTGTTGTTAACCAAACTGCTATTGAGAACAACAATCCC 348
|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 298 AGGCCTCAGGATCAGCCTACCCTTGTTGCTAATCAAACTGCTATTGAGAACAACGATCCC 357
Query 349 GGAAATGGGTCAGGAGAATCAACCGAGGTAGTCAATAAAGAAGGATTACCAGAAAATATA 408
| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 358 GAAAATGGGTTAGGAGAATCAACCGAGGAAGTCAGTAAAGAAGGATTACCAGAAAATATA 417
Query 409 ATCTCCGGG-TTACCAACTCAAAAGTACAGTCGCAAAACTTGGTGGTGGTCAAAGAAAAC 467
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 ATCTC-GGGATTACCAACTCAAAAGTACAGTCGCAAAACTTGGTGGTGTTCAAAGAAAAC 476
Query 468 TTTTGTTCCTGATAGAAAAGAGTGTTCTATATGTATAGCCGACTATGAGAAGGGAGATAA 527
||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 477 TTTTGTTCCCGATAAAAAAGAGTGTTCCATATGTATAGTCGACTATGAGAAGGGAGATAA 536
Query 528 GATAACCATCTTACCATGTAAACATGCCTTCCATAAGGATTGCATTGCAAATTGGTTAAA 587
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 GATAACTATCTTACCATGTAAACATGCCTTCCATAAGGATTGCATTTCAAATTGGTTAAA 596
Query 588 AGAAAACAAGGTATG 602
|||||||||||||||
Sbjct 597 AGAAAACAAGGTATG 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5