BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52160.1

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949772 jgi|Araly1|949772|scaffold_801659.1                        468    2e-131


> Ahg949772 jgi|Araly1|949772|scaffold_801659.1
Length=330

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 308/334 (92%), Gaps = 6/334 (2%)
 Strand=Plus/Plus

Query  76   AAAGATAAAAGAAAGAAGAAGATGGCAGCTTCGTCCAAGTACTCTTCCATGTCATTCATG  135
            |||||| ||||||||||||||||||||||||||| | |  ||||||||| ||||||||||
Sbjct  1    AAAGAT-AAAGAAAGAAGAAGATGGCAGCTTCGTGC-A--ACTCTTCCAAGTCATTCATG  56

Query  136  AAGGTGGCAATGATGGTGGCGCTGGTCTTGGTGGTGGCAGCCACTGTGGTGGATGGACAA  195
            | || || | ||||||||||||||||| ||||||||||||| || |||||||||||||| 
Sbjct  57   ATGGCGGTAGTGATGGTGGCGCTGGTCCTGGTGGTGGCAGCAACGGTGGTGGATGGACAG  116

Query  196  AGCTGCAATGCGCAGCTGAGTACACTGAACGTGTGTGGTGAGTTTGTGGTTCCCGGAGCT  255
            ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  117  AGCTGCAATGCACAGCTGAGTGGACTGAACGTGTGTGGTGAGTTTGTGGTTCCCGGAGCT  176

Query  256  GACAGGACCAACCCAAGTGCCGAATGTTGCAATGCTCTTGAGGCAGTGCCAAACGAATGC  315
            |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct  177  GACAGGACCAACCCGAGTGCTGAGTGTTGCAATGCTCTTGAGGCAGTGCCAAATGAATGC  236

Query  316  CTTTGCAACACGTTTCGCATTGCCTCTAGGCTTCCCTCTCGCTGCAACATTCCTACACTT  375
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  237  CTTTGCAACACGTTTCGCATTGCCTCTAGGCTTCCCTCTCGTTGCAACATCCCTACACTT  296

Query  376  TCATGCAGTTGATATGGATCCTC--ATATTAATT  407
            |||||||||||||||||||||||  |||| ||||
Sbjct  297  TCATGCAGTTGATATGGATCCTCCCATATAAATT  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22835627283


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5