BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52180.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949774 jgi|Araly1|949774|scaffold_801661.1 2010 0.0
Ahg311236 jgi|Araly1|311236|fgenesh1_pm.C_scaffold_1000016 401 6e-111
> Ahg949774 jgi|Araly1|949774|scaffold_801661.1
Length=1403
Score = 2010 bits (1088), Expect = 0.0
Identities = 1309/1414 (93%), Gaps = 22/1414 (2%)
Strand=Plus/Plus
Query 56 AGAGTGAAGAAACAATGCTTGAGCTT-TTAGGAAG-TTACAGGAATCTAACACTTCAAAT 113
||||| ||| |||||||||||||||| || || || |||||||||||| |||||||||||
Sbjct 9 AGAGTAAAG-AACAATGCTTGAGCTTCTT-GG-AGCTTACAGGAATCTCACACTTCAAAT 65
Query 114 CCTACTATCTCTCTTCTTAACGTTAGTCCTTTCATTCGTCAAAATCTCAATCATCTTCCT 173
|||| |||||||||||||||| || |||| |||||| ||| ||||||||||||||||||
Sbjct 66 CCTATTATCTCTCTTCTTAACCCTAATCCTCTCATTCTTCAGAATCTCAATCATCTTCCT 125
Query 174 CCACGGTCTCTGTACCTATATCCAACCTGAAAATCTCAACCAAAACAACACCGGAAATGG 233
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 126 CCACGGTCTCTGTACCTATACCCAACCTGAAAATCTCAACCAAAACAACGCCGGAAATGG 185
Query 234 ACTCCGACCTGCGATTAGACGACCATCTAGTACCGACGATCCAAAATCTAATGTTGAAGT 293
|||| |||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct 186 ACTCAGACCCGCGATTCGACGACCATCTAGTACCGATGATCCAAAGTCCAATGTTGAAGT 245
Query 294 CAGAAGAAGAAACAGATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTT 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AAGAAGAAGAAACAGATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTT 305
Query 354 TCGAATTAAGCTCGATGAAGATCATCTCAGATCTCGAATGTATTTCACTGAGTACAATTC 413
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 306 TCGAATTAAGCTCGATGAAGACCATCTCAGATCTCAAATGTATTTCACTGAGTACAATTC 365
Query 414 GCTATTCGTGATATCGTTCTTAGCTGTTTCTTGCTTTCTTCTAGATAAGTACTTCGGTAT 473
| | |||||| ||| |||||||||||||| |||||||||||| | || ||||||||
Sbjct 366 GTTTTTCGTGTTATTGTTCTTAGCTGTTTGTTGCTTTCTTCTTCAGAATTACTTCGG--- 422
Query 474 TATTGAGGATAATAGTCATGGAGTTTTAAGTAATGGATTGATGTTTCCGATTGTTCTAGG 533
| |||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 423 TGTTGAGG---ATAGTCATGGAGTTTTGGGTAATGGATTGATGTTTCCGCTTGTTCTTGG 479
Query 534 GTTTATAGCTTTGTGTAAGGTGTTT-GTAGCTTTGGGGAAGATTTCTATTGAGAGATCTG 592
||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||
Sbjct 480 GTTTATAGCTTTGTGTAAGGT-TTTCGTTGCTTTGGGGAAGATTTCGATTGAGAGATCTG 538
Query 593 CTTCTAAGGAATCTGAGAAGAGATTGAGTTTGATTTTTGGTGTTTTAGGGTTTGTGTTTG 652
|||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTCGAAGAAATCTGAGAAGAAATTGAGTTTGATTTTTGGTGTTTTAGGGTTTGTGTTTG 598
Query 653 GGATTATAATCAGTGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTAGGTTCTGTTG 712
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 GGATTATTATCAGTGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTGGGTTCTGTTG 658
Query 713 ATGCGTTTTGTTGCATTGTGATATCGTTTTCGATGGCTTGTATTGGTGGTTTCCTTTATA 772
|||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 659 ATGCGTTTTGCTGTATTGTGATATCGTTTTCGATGGCTTGTATCGGTGGATTCCTTTATA 718
Query 773 TGCCTGCTGGAAGAAGTGCAAGGTCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATT 832
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 TGCCTGCTGGGAGAAGTGCAAGATCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATT 778
Query 833 TGTCGATCATTTCTTGTGGATGGTTTGGTAGGATGATTCTATATGCGAATTATATCGTAT 892
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 779 TGTCTATCATTTCTTGTGGATGGTTTGGGAGGATGATTCTCTATGCGAATTATATCGTAT 838
Query 893 CGGTTTTCACTTCGTTGCTTTGGATTCATCCGTTGGCAGAGGTTTTAGTGAAGAGAAGTG 952
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 839 CGGTGTTCACTTCGTTGCTTTGGATTCATCCGTTGGCAGAGATTTTGGTGAAGAGAAGTG 898
Query 953 GTGATCCTGGGACTAGTGGTAGTAGTCAGAGTCAGAGTGGGTTGGTTGGTAATGTAGGCA 1012
| || || | ||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct 899 ATAATGCT--G-CTA---GTAGTAG---GAGTCAGACTGGGTTGGTTGGAAATGTAGGCA 949
Query 1013 TGTTGAGTGATGATTTTGCGAAGTTTCGGGTTTTGTGTTTGTTACTTTCGGGTTTACTAC 1072
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 950 TGTTGAGTGATGATTTTGTTAAGTTTCGGGTTTTTTGTTTGTTACTGTCGGGTTTACTGC 1009
Query 1073 AAGCGATGGCGGTTCGTCCTAACCTTCAGATGTTCTTGAACGAAGCAGTCCTTTCGTGGT 1132
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1010 AAGCGATGGCGGTTCGTCCTAACCTTCAGATGTTTTTGAACGAAGCAGTGCTCTCGTGGT 1069
Query 1133 ATCAGAGATTACATGGAAGTAAAACTCCTGATTTGGATTTTAGTCGTGCAAAGATGTTTC 1192
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1070 ATCAGAGATTACATGGAAGCAAAACTCCTGATTTGGAGTTTAGTCGGGCAAAGATGTTCC 1129
Query 1193 TTCACAACCATTACCTATGCCTTGTTGCTCTGCAGTTTTTGGCGCCTTCGGTGCTAGTGA 1252
|||||||||| ||| ||||||| || |||||||||||||||||||| ||||| || ||||
Sbjct 1130 TTCACAACCACTACTTATGCCTCGTCGCTCTGCAGTTTTTGGCGCCGTCGGTTCTTGTGA 1189
Query 1253 TTCTTTTCCTCGGCTTGTCTCAGATTGACTTGAGCTCTTTTGCTGTATCTCAACTGGTAT 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TTCTTTTCCTCGGCTTGTCTCAGATTGACTTGAGCTCTTTTGCTGTATCTCAACTGGTAT 1249
Query 1313 GTGGTTCTTTGCCTTGTAGCGATTTCATTAAACAAGTTGGTTTGTTGATGTCTTGGTGGG 1372
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1250 GTGGTTCTTTGCCTTGTAGCGAATTCATTAAACAAGTCGGTTTGTTGATGTCTTGGTGGG 1309
Query 1373 TTCTTTTTGTTTGGTCGGGTTTTACTTCAGCGAGTCTTGTTTTCTATCGTCGAGGTGTCT 1432
| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1310 TGCTCTTTGTTTGGTCGGGTTTTGCTTCAGCGAGTCTTGTTTTTTATCGTCGAGGTGTCT 1369
Query 1433 TGTATGTTTCTTGAGAAGTCTGTAGCTTTTTCCC 1466
||||||||||||||||||||||||||||||||||
Sbjct 1370 TGTATGTTTCTTGAGAAGTCTGTAGCTTTTTCCC 1403
> Ahg311236 jgi|Araly1|311236|fgenesh1_pm.C_scaffold_1000016
Length=1005
Score = 401 bits (217), Expect = 6e-111
Identities = 269/293 (92%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 309 ATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTTTCGAATTAAGCTCGA 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTTTCGAATTAAGCTCGT 221
Query 369 TGAAGATCATCTCAGATCTCGAATGTATTTCACTGAGTACAATTCGCTATTCGTGATATC 428
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||
Sbjct 222 TGAAGATCATCTCAGATCTCGAATGTATTTCACTAAGTACAATTCGATTTTCGTGTTATT 281
Query 429 GTTCTTAGCTGTTTCTTGCTTTCTTCTAGATAAGTACTTCGGTATTATTGAGGATAATAG 488
||||||||||||||||||||||||||| |||| ||||||||| | | ||||||| |
Sbjct 282 GTTCTTAGCTGTTTCTTGCTTTCTTCTTCATAATTACTTCGGTGT-A--GAGGATA---G 335
Query 489 TCATGGAGTTTTAAGTAATGGATTGATGTTTCCGATTGTTCTAGGGTTTATAGCTTTGTG 548
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 336 TCATGGAGTTTTGGGTAATGGATTGATGTTTCCGATTGTTCTTGGGTTTATAGCTTTGTG 395
Query 549 TAAGGTGTTT-GTAGCTTTGGGGAAGATTTCTATTGAGAGATCTGCTTCTAAG 600
|||||| ||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct 396 TAAGGT-TTTCGTTGCTTTGGGGAAGATTTCGATTGAGAGATCTGCTTCGAAG 447
Score = 385 bits (208), Expect = 6e-106
Identities = 255/278 (92%), Gaps = 2/278 (1%)
Strand=Plus/Plus
Query 968 GTGGTAGTAGTCA-GAGTCAGAGTGGGTTGGTTGGTAATGTAGGCATGTTGAGTGATGAT 1026
|||| | |||| | |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 713 GTGGAACTAGT-AGGAGTCAGACTGGGTTGGTTGGTAATGTAGGCATGTCGAGTGATGAT 771
Query 1027 TTTGCGAAGTTTCGGGTTTTGTGTTTGTTACTTTCGGGTTTACTACAAGCGATGGCGGTT 1086
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 772 TTTGTTAAGTTTCGGGTTTTGTGTTTGTTACTATCGGGTTTACTACAAGCGATGGCTGTT 831
Query 1087 CGTCCTAACCTTCAGATGTTCTTGAACGAAGCAGTCCTTTCGTGGTATCAGAGATTACAT 1146
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 832 CGTCCTAACCTTCAGATGTTTTTGAACGAAGCAGTGCTCTCGTGGTATCAGAGATTACAT 891
Query 1147 GGAAGTAAAACTCCTGATTTGGATTTTAGTCGTGCAAAGATGTTTCTTCACAACCATTAC 1206
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 892 GGAAGCAAAACTCCTGATTTGGATTTTAGTCGTGCGAAGATGTTCCTTCACAACCACTAC 951
Query 1207 CTATGCCTTGTTGCTCTGCAGTTTTTGGCGCCTTCGGT 1244
|||| || | |||||||||||||||||||| |||||
Sbjct 952 TTATGTCTCCTCGCTCTGCAGTTTTTGGCGCCGTCGGT 989
Score = 307 bits (166), Expect = 1e-82
Identities = 198/213 (93%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 666 TGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTAGG--TTCTGTTGATGCGTTTTGT 723
||||||| |||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 471 TGCTGGTATTTTTCCTAAAGGATTTGATTTTCAATT-GGAATT-TGTTGATGCGTTTTGC 528
Query 724 TGCATTGTGATATCGTTTTCGATGGCTTGTATTGGTGGTTTCCTTTATATGCCTGCTGGA 783
|| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 529 TGTATTGTGATATCGTTTTCGATGGCTTGTATCAGTGGATTCCTTTATATGCCTGCTGGG 588
Query 784 AGAAGTGCAAGGTCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATTTGTCGATCATT 843
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 589 AGAAGTGCAAGGTCGTTTTTGGTTGGGACTGATCAGATTAGGAGTAATTTGTCTATCATT 648
Query 844 TCTTGTGGATGGTTTGGTAGGATGATTCTATAT 876
|||||||||||||| |||||||||||||| |||
Sbjct 649 TCTTGTGGATGGTTCGGTAGGATGATTCTCTAT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5