BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52190.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495287 jgi|Araly1|495287|fgenesh2_kg.8__1103__AT5G52190.1 1027 0.0
> Ahg495287 jgi|Araly1|495287|fgenesh2_kg.8__1103__AT5G52190.1
Length=754
Score = 1027 bits (556), Expect = 0.0
Identities = 697/764 (91%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 30 TTTGTAAACGTGGTCCAAAATGCACGATATAAgatgatgatgatgatgatAAGCTGAATT 89
|||||||| |||||||||| |||||||||| | | |||||| | ||||||||||||
Sbjct 1 TTTGTAAATGTGGTCCAAATTGCACGATAT----T-AAGATGAT-A-CATAAGCTGAATT 53
Query 90 ATTCAACATCAATGGCGAACGAGAAAGCTCAAGAAATGGCGAATCTATCTTCTCAAATCT 149
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 54 ATTCAACATCAATGGTGAACGAGAAAGCTCAAGAAATGGCGAATCTATCTTCCCAAATCT 113
Query 150 GCAACCAAATCTCATCTGTCTTCACAAAACCAACCTCACCATATCCACCACCGCTCGATC 209
| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 114 GTAACCAAATCTCCTCCGTCTTCACCAAACCAACCTCTCCATATCCACCACCACTCGATC 173
Query 210 TCCTAGTAACAGAGCTTACCGCAATCTCCCGCAACCGCAACAACTCTCGTATCTTCCTCT 269
||||||||||||| || | || |||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCTAGTAACAGAACTCGCTGCTATCTCCCGCAACCGCAACAACTCTCGTATCTTCCTCT 233
Query 270 ACGGTGTTGGACGCGAAGGTCTAATGCTAAAAGCCTTCGCGATGCGTCTCTTCCACTTTG 329
||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 234 ACGGTGTCGGACGCGAAGGTCTCATGTTAAAAGCCTTCGCGATGCGTCTCTTCCACCTTG 293
Query 330 GTCTCCCCACTCACTTAGTCTTCGACATGACAACACCTCCAATCTCATCTTCTGATCTCT 389
||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 294 GTCTCTCTACTCACTTAGTCTTCGACATGACAACACCACCAATCTCATCTTCCGATCTCC 353
Query 390 TAATCGCTTCAGCTGGTCCTGGAGGATTCTCAACCGTCGATGCGCTTTGCTCTGTAGCTA 449
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 354 TAATCGCTTCAGCTGGTCCTGGAGGATTCTCAACCGTCGATGCGATTTGTTCTGTAGCTA 413
Query 450 AATCGAACGGTGCTAAGGTTATACTTATTACTGCAGAGCCAGCGATAGGTTCTTGTGTGA 509
|||| |||||||||||||||||||| || ||||| ||||| | |||||||||||||||||
Sbjct 414 AATCCAACGGTGCTAAGGTTATACTCATCACTGCGGAGCCGGAGATAGGTTCTTGTGTGA 473
Query 510 AACATGCAACGGATGTCTGTTATGTACCTGCTCAGACTATGGCGAGTGATAACGGTGGTG 569
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 474 AACATGCGACGGATGTGTGTTATGTTCCTGCTCAGACTATGGCGAGTGATAACGGTGGTG 533
Query 570 GTG-ATTCGGTGGAAATGGGAGAGAGA-CGTTTATTGCCGATGGGGAGTGTATATGAAGG 627
|| | ||| ||| |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct 534 ATGCA-GCGGCGGAGATGGGAGAGAGACCG-TTGTTGCCGATGGGAAGTGTATATGAAGG 591
Query 628 AGCTTTGTTTGTGTTGTTTGAGATGGTTGTTTACAAGTTGGGTGAGGTTTTGGGTGAGTC 687
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 592 AGCTTTGTTTGTGTTGTTTGAGATGGTTGTTTACAAGTTGGGTGACGTTTTGGGTGAGTC 651
Query 688 TTCTGAGTCGGTACGTGCTCGTCATACTAATCTTGAGTGACGTA-GCAATTTTGATTAGC 746
||||||||||||||| |||||||| ||||||||||||||||||| | ||||| |||||||
Sbjct 652 TTCTGAGTCGGTACGCGCTCGTCACACTAATCTTGAGTGACGTAAGGAATTT-GATTAGC 710
Query 747 ATGTGCTGTTGTTTTGGTATTTCGCTTGAGAAATGGCTGCTGTT 790
||||| |||||||||||| ||| | |||||||| | |||||||
Sbjct 711 ATGTGGTGTTGTTTTGGTGTTTTGGTTGAGAAACAGTTGCTGTT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5