BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52200.2
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949776 jgi|Araly1|949776|scaffold_801663.1 861 0.0
> Ahg949776 jgi|Araly1|949776|scaffold_801663.1
Length=598
Score = 861 bits (466), Expect = 0.0
Identities = 542/576 (94%), Gaps = 16/576 (3%)
Strand=Plus/Plus
Query 179 GGGGCGTGTTCAATGGGATGAAGCTAATATAGTGGAGATTGAATCGAACAAACCTGTTAG 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 38 GGGGCGTGTTCAATGGGATGAAGCTAATATAGTGGAGATTGAATCTAACAAACCTGTTAG 97
Query 239 GCAGAAGATTACTGAACCAAAGACACCATACCACCCGATGATGGATGATGATGGTTCTTT 298
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 98 GCAGAAGATTACTGAACCAAAGACACCGTACCACCCGATGATTGATGATGATGGTTCTCT 157
Query 299 GTCTCCTAGAGGAAGAGCGTTTGATGAATGTGTTGATGATATGCAACGAGCTGAAGAACT 358
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 158 GTCTCCTAGAGGAAGATCGTTTGATGAATGTGTTGATGATATGCAACGAGCCGAAGAACT 217
Query 359 GAGGAA-TGTTCTGAATGATGCAGCAGCTTCTTCCAGTAGAAATAGTAGCCAGGGTTCTG 417
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 218 GA-GAATTGTTCTGAATGATGCAGCAGCTTCTTCCAGTAGACATAGTAGCCAGGGTTCTG 276
Query 418 GTGGTGGTGGCTGGAGCTCGTCTGATGAAGAAGAAGAAGAAGCAGATCCAATGGATCAAG 477
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 277 GTGGTGGTGGCTGGAGCTCGTCTGATGAAGAAGAAG------CAGATCCTATGGATCAAG 330
Query 478 ATGAAGAAGGTTCTGGAAGTGGTAAAAATGAACGTTTCAACGCACACAGAAAAGCACATT 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 331 ATGAAGAAGGTTCTGGAAGTGGGAAAAATGAACGTTTCAACGCACACAGAAAAGCACATT 390
Query 538 ACGACGAGTTTCGGAAGGTGAAGGAACTGAGATCCTCAGGGTCATTCTATGAAGAAGAAG 597
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 391 ACGACGAGTTTCGGAAGGTGAAGGAACTGAGATCCTCAGGGTCGTTCTATGAAGAAGAAG 450
Query 598 AGGAAGAGGATGATGGTGCAAAAGGTAGTAAATCAGAGACAACAACAAACTCACGACACA 657
||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||
Sbjct 451 AGGAAGAGGATGATGGTGCAAAAGGCAGTAAATCAGAGGCAACAAC---CTCGCGACACA 507
Query 658 CTAAAGGCGGAAACAAAGAGTTAGATGCAACCAAAACGGTATCAGGGACGTCGTCATCTT 717
||||||||| ||||||||||||||||||| ||| | |||||||||||||||| | ||||
Sbjct 508 CTAAAGGCGAAAACAAAGAGTTAGATGCAGCCACAGCGGTATCAGGGACGTC-T--TCTT 564
Query 718 CATCCCCTGAGTTAATATAAAACCTTTCTGTTCAAT 753
||||||| ||||||||||||| ||| ||||||||||
Sbjct 565 CATCCCC-GAGTTAATATAAA-CCTCTCTGTTCAAT 598
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 18 AGTTGCTGGAGATTTTGAAGATGACCGAACCAAAGAGG 55
||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTGCTGGAGATTTTGAAGATGACCGAACCAAAGAGG 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5