BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52210.1
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495289 jgi|Araly1|495289|fgenesh2_kg.8__1105__AT5G52210.2 1325 0.0
> Ahg495289 jgi|Araly1|495289|fgenesh2_kg.8__1105__AT5G52210.2
Length=1018
Score = 1325 bits (717), Expect = 0.0
Identities = 859/923 (93%), Gaps = 28/923 (3%)
Strand=Plus/Plus
Query 71 ACAAGGGAAGATCAAAGTAATTAAATAAGCTGAAGTAAGAGGAAGTGATGTTTTCTCTTA 130
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 122 ACAAGGGAAGATCAAAGTAATTAAAGAAGCTGAAGTAGGAGGAAGTGATGTTTTCTCTTA 181
Query 131 TGTCTGGACTATGGAGTTACATGTTTAGCAAGACTGAGTTTAATGTGCTTATTCTTGGTA 190
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 182 TGTCTGGACTATGGAGTTACATGTTTAGCAAGACTGAGTTTCATGTGCTTATTCTTGGTA 241
Query 191 TCGACAAAGCTGGGAAGACGACATTTTTGGAGAAACTGAAGACGATATACTCAATCTCGG 250
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 242 TCGACAAAGCTGGGAAGACGACATTTTTGGAGAAATTGAAGACGATATACTCAATCTCGG 301
Query 251 AAGGTCTTCCTCATGATCGAATTGTTCCTACTGTGGGGCTT-AATATTGGTCGCATTGAA 309
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 302 AAGGTCTTCCTCATGATCGAATTGTTCCTACTGTGGGG-TTAAATATTGGTCGCATTGAA 360
Query 310 GTCTCCAATGCTAAAATTGTGTTCTGGGATCTGGGAGGTCAGCCTGGTTTGCGGTCTATT 369
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 361 GTCTCCAATGCTAAAATTGTGTTTTGGGACCTGGGAGGTCAGCCTGGTTTGCGGTCAATT 420
Query 370 TGGGAGAAATACTATGAAGAAGCACACGCGTTGATATATTTGATTGATGCAGCTTGCCCA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGAGAAATACTATGAAGAAGCACACGCGTTGATATATTTGATTGATGCAGCTTGCCCA 480
Query 430 ACCCGCTTTGAAGATTCTAAATCTGCTTTAGAAAAAGCCCTGCGGCATGAGGATTTGCAA 489
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCCGCTTTGAAGATTCAAAATCTGCTTTAGAAAAAGCCCTGCGGCATGAGGATTTGCAA 540
Query 490 GGAGCCCCTCTTTTAATATTGGCAAACAAGCAAGACCTCACAAATGCTGTATCGGCTGAG 549
|||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 GGAGCCCCGCTTTTGATTTTGGCAAACAAGCAAGACCTCCCAAATGCTGTATCGGCTGAA 600
Query 550 GAACTGGACCGATACCTTGATTTAAAGAAATTGGATGAAAGAGTGTACATGTTTGAAGCA 609
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GAACTGGATCGATACCTTGATCTAAAGAAATTGGATGAAAGGGTGTACATGTTTGAAGCA 660
Query 610 GTTTCTGGATATGATGGGCGAGGAATCAAAGAAAGTATAGAATGGCTGGTTGGAGTAATG 669
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 661 GTTTCTGGATATGATGGGCGAGGAATCAAAGAAAGTATAGAATGGCTAGTCGGCGTGATG 720
Query 670 GAGAAAAGCAAGAGAACCGAATCATTAAGAGCCCGTGCAGGGTACACTCCTGTGCCAAAT 729
|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 721 GAGAGAAGCAAAAGAACCGAAACATTAAGAGCCCGTGCAGGGTACACTCCTGTGCCTAAT 780
Query 730 TCATAGACACGAGAAAGGACTCGCAAACTCAACTCTCCAGTCAACTGGTTTCCTTTGAAA 789
|| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |
Sbjct 781 TCGTAGACACGA-AAAGGACTCGCACACTCAACTCTCCAATCAACTGGTTTCCTTTGGA- 838
Query 790 TACATTTGTAGATAAGAACAGACCACAATCTTTGCATCATTTTGGCT-AGCATCAAATTC 848
||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 839 TACATTTGTAGATAA-AACAGACCTGAATCTTTGCATTGTTTTGGCTCAGCATCAAATTC 897
Query 849 ACATGATGAGTAGGAACTAGTAATCTCCTTATTGCCACCTTCATATGTTTACTAATGTTA 908
||||||||||||||||||||||| || || | || | | ||||| | | | |
Sbjct 898 ACATGATGAGTAGGAACTAGTAAA-TC-TT----C-AC-T--A-ATGTT-A-T---G--A 939
Query 909 TAATTCAATTGAGACTTTGTGGTGATGATTGCATTTAGTTACTGCAAACCCAATAATGTA 968
| | ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 940 T--T-CAATTGAGATTTTGTGGTCATGATTGCATTTAGTTACTGCAAACC-AATAATGTA 995
Query 969 ATCAAGTTTCTTCATTTGCAAAC 991
|||||||||||| ||||||||||
Sbjct 996 ATCAAGTTTCTTGATTTGCAAAC 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36864860739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5