BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G52220.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916851 jgi|Araly1|916851|Al_scaffold_0008_1602                    542    1e-153


> Ahg916851 jgi|Araly1|916851|Al_scaffold_0008_1602
Length=387

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 329/347 (95%), Gaps = 0/347 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCGAATGGGCGATCGTA  60
            ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct  1    ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCCAGTGGGCGATTGTA  60

Query  61   GAGCTTCAAGGAGTCGTCGAGACTCAAGCTTCCTTCCAAGGTTCTATTCAGAATCTCGAG  120
            || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  61   GAACTTCAAGGAGTTGTCGAGACTCAAGCTTCGTTCCAAGGTTCTATTCAGAATCTTGAG  120

Query  121  ATCGGTCGTCTCTGCCACTCCGATTCCTCACAGGGAACATACACGTTCACGGTGGGTTAC  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  121  ATCGGTCGTCTCTGTCACTCCGATTCCTCACAGGGAACGTACACGTTCACGGTTGGTTAC  180

Query  181  CATGAACTCGTAGGCTCTAAAGTGACTCTAAAGAAGCCATTACTGGTTTTGAAGAAGCTT  240
            |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct  181  CATGAACTCGCAGGCTCTAAAGTGCCTCTGAAGAAGCCATTACTGGTTTTGAAGAAACTT  240

Query  241  CAATTTGATGAAGTTTCAGGGAAAGCAACGGAGCTTGAAGTTGTTGGGATTATACGAACA  300
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  CAATTTGATGAAGTTTCAGGGAAAGCAACGGAACTTGAAGTTGTTGGGATTATACGAACA  300

Query  301  AAGATCTTGTTTAAAACCAGACCTAAGCCTCTTATTTCCGGTAACAA  347
            |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct  301  AAGATCTTGTTTAAGACCAGACCTAAGCCTCTCATTTCTGGTAACAA  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5