BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52240.1 Length=908 Score E Sequences producing significant alignments: (Bits) Value Ahg495293 jgi|Araly1|495293|fgenesh2_kg.8__1109__AT5G52240.1 1310 0.0 > Ahg495293 jgi|Araly1|495293|fgenesh2_kg.8__1109__AT5G52240.1 Length=841 Score = 1310 bits (709), Expect = 0.0 Identities = 805/850 (95%), Gaps = 12/850 (1%) Strand=Plus/Plus Query 62 CCATGGCGTTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTTT 121 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 CCATGGCGCTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTCT 60 Query 122 CTCCTGTTGTCTTCTTCACTGCTCTAGCTCTCGCCTTCGCCATTTACCAAGTCATCTCAG 181 ||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct 61 CTCCTGTAGTATTCTTCACCGCTCTCGCTCTCGCCTTCGCCATCTACCAAGTCATCTCAG 120 Query 182 GCTGGTTTGCCTCGCCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 241 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCTGGTTTGCCTCACCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 180 Query 242 AAGAGGAGGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAGGAGGAGC 301 ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 AAGAGAATGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAAGAGGAGC 240 Query 302 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 300 Query 362 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGACCATATGCTTTGTTTG 421 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 301 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGCCCATACGCTTTGTTTG 360 Query 422 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCATTTGAGGAGAAAGA-CTTGACT 480 ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 361 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCGTTTGAGGAGAAAGATCT-GACT 419 Query 481 TGGGATGTCTCTGGTCTTGGTCCCTTTGAGCTAGATGCTCTTCAAGATTGGGAGTACAAG 540 |||||| |||||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct 420 TGGGATATCTCTGGTCTTGGTCCCTTTGAGCTAGAAGCTCTTCAGGACTGGGAATACAAG 479 Query 541 TTCATGAGCAAGTATGCTAAGGTTGGTACTGTCAAAGTGGCTGGTTCAGAACCTGAAACC 600 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 480 TTCATGAGCAAATATGCTAAGGTTGGTACTGTCAAAGTGGCCGGTTCAGAACCTGAAACC 539 Query 601 GCATCTGTCTCTGAACCCACAGAGAATGTTGAGCAAGATGCTCATGTAACCACAACGCCT 660 |||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||| Sbjct 540 GCATCTGTGTCTGAACCCGCAGAGAATGTTGACCGAGATGCTCATGTAACCACAACGCCT 599 Query 661 GGGAAGACCGTTGTTGATAAGAGTGATGATGCTCCTGCTGAGACTGTGTTGAAGAAGGAG 720 | |||||||| |||||||||||||||||| |||||||||||||||| ||||||| | || Sbjct 600 GAGAAGACCGCTGTTGATAAGAGTGATGAGGCTCCTGCTGAGACTGAGTTGAAG--G-AG 656 Query 721 GAGTAGAGCCCATTTCCAAGATTTGCTCTGATTTGTCATAGAGACCAGTTTTATGAAAAG 780 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct 657 ---TAGAGCCCATTTCCAAGATTTGCTCTGATTTTTCATAGAGACCAGTTTTAAGAAA-G 712 Query 781 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 772 Query 841 TAAAGATTGCTGATTAATGATAAGaaaaaaaTGTTTTATAAACTGC--ATATCAGAAGGC 898 ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| Sbjct 773 TAAAGATTGCTGATTAATGATAAGACAAAAG-GTTTTATAAACTGCTCATATCAGAAGGC 831 Query 899 GTTGCATTGC 908 |||||||||| Sbjct 832 GTTGCATTGC 841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33662535711 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5