BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52240.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495293 jgi|Araly1|495293|fgenesh2_kg.8__1109__AT5G52240.1 1310 0.0
> Ahg495293 jgi|Araly1|495293|fgenesh2_kg.8__1109__AT5G52240.1
Length=841
Score = 1310 bits (709), Expect = 0.0
Identities = 805/850 (95%), Gaps = 12/850 (1%)
Strand=Plus/Plus
Query 62 CCATGGCGTTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTTT 121
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CCATGGCGCTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTCT 60
Query 122 CTCCTGTTGTCTTCTTCACTGCTCTAGCTCTCGCCTTCGCCATTTACCAAGTCATCTCAG 181
||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 CTCCTGTAGTATTCTTCACCGCTCTCGCTCTCGCCTTCGCCATCTACCAAGTCATCTCAG 120
Query 182 GCTGGTTTGCCTCGCCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGGTTTGCCTCACCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 180
Query 242 AAGAGGAGGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAGGAGGAGC 301
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 AAGAGAATGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAAGAGGAGC 240
Query 302 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 300
Query 362 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGACCATATGCTTTGTTTG 421
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGCCCATACGCTTTGTTTG 360
Query 422 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCATTTGAGGAGAAAGA-CTTGACT 480
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 361 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCGTTTGAGGAGAAAGATCT-GACT 419
Query 481 TGGGATGTCTCTGGTCTTGGTCCCTTTGAGCTAGATGCTCTTCAAGATTGGGAGTACAAG 540
|||||| |||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 420 TGGGATATCTCTGGTCTTGGTCCCTTTGAGCTAGAAGCTCTTCAGGACTGGGAATACAAG 479
Query 541 TTCATGAGCAAGTATGCTAAGGTTGGTACTGTCAAAGTGGCTGGTTCAGAACCTGAAACC 600
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 TTCATGAGCAAATATGCTAAGGTTGGTACTGTCAAAGTGGCCGGTTCAGAACCTGAAACC 539
Query 601 GCATCTGTCTCTGAACCCACAGAGAATGTTGAGCAAGATGCTCATGTAACCACAACGCCT 660
|||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 540 GCATCTGTGTCTGAACCCGCAGAGAATGTTGACCGAGATGCTCATGTAACCACAACGCCT 599
Query 661 GGGAAGACCGTTGTTGATAAGAGTGATGATGCTCCTGCTGAGACTGTGTTGAAGAAGGAG 720
| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| | ||
Sbjct 600 GAGAAGACCGCTGTTGATAAGAGTGATGAGGCTCCTGCTGAGACTGAGTTGAAG--G-AG 656
Query 721 GAGTAGAGCCCATTTCCAAGATTTGCTCTGATTTGTCATAGAGACCAGTTTTATGAAAAG 780
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 657 ---TAGAGCCCATTTCCAAGATTTGCTCTGATTTTTCATAGAGACCAGTTTTAAGAAA-G 712
Query 781 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 772
Query 841 TAAAGATTGCTGATTAATGATAAGaaaaaaaTGTTTTATAAACTGC--ATATCAGAAGGC 898
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 773 TAAAGATTGCTGATTAATGATAAGACAAAAG-GTTTTATAAACTGCTCATATCAGAAGGC 831
Query 899 GTTGCATTGC 908
||||||||||
Sbjct 832 GTTGCATTGC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5