BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52250.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495294 jgi|Araly1|495294|fgenesh2_kg.8__1110__AT5G52250.1 2074 0.0
> Ahg495294 jgi|Araly1|495294|fgenesh2_kg.8__1110__AT5G52250.1
Length=1306
Score = 2074 bits (1123), Expect = 0.0
Identities = 1251/1312 (95%), Gaps = 11/1312 (1%)
Strand=Plus/Plus
Query 1 ATAGTTTCGTGTGGACCTAACTAAAACTAGTCGTAACTCATTCATGGAGGCTTTGTTCTG 60
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATAGTTTCTTGTGGACCTAACAAAAACTAGTCTTAACTCATTCATGGAGGCTTTGTTCTG 60
Query 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGAtctatcttcttcttcttc 120
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATC--TC-TCTTCTTCTTC 117
Query 121 atatacatggccaatgatcatgacctcctcttcttcttcttcttcatctCCCACAATCAT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 ATATACATGGCCAATGATCATGACCTCCTCTTCTACTTCTTCTTCATCTCCCACAATCAT 177
Query 181 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTTTCCGCCGTTGTTTCCTC 240
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 178 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTCTCCGCCGTCGTTTCCTC 237
Query 241 CGCATCCACCGGATCAGACGCTATCGGAGCAATCGAGTTCGACCCTACCGGAGAGATCAT 300
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 CGCATCCACTGGATCAGACGCTATCGGAGCAATCGAGTTTGACCCTACCGGAGAGATCAT 297
Query 301 AGCTACGGGAGGAATCGCAAGAAAGATCAGATCGTATCGTTTAAGCTCTTTGTTAGAGTC 360
|||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 AGCTACTGGAGGGATCGCGAGAAAGATCAGATGGTATCGTTTAAGCTCTTTGTTAGAGTC 357
Query 361 ACGTGACGATCACGTAACAGCTTCAGAGAGCTATATTTGCACGCCGGCGAAGCTTAGTAG 420
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 358 ACGTGACGATCACGTAACAGCTTCAGAGAGCTGTATCTGCACGCCAGCGAAGCTTAGTAG 417
Query 421 TCTCAAATGGAGACCCGATTTTTCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCAAATGGAGACCCGATTTATCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 477
Query 481 TGTCACCGAGTACGACGTGGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 540
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGTCACAGAGTACGACGTTGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 537
Query 541 TAGAAGGATTTGGAGCGTGGACTACACGCTTTACAATGGCTCTCTTATAGGCGCGTCAGG 600
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 TAGAAGGATTTGGAGCGTAGACTACACGCTCTACAATGGCTCTCTTATAGGCGCGTCAGG 597
Query 601 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTAGAAGAAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTGGAAGAAAC 657
Query 661 GGTTAGGCCCGGTGGTGGAGCGGCGATTTGTTCGGTAGAGTTCGATCCGTTCGGTGGATC 720
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 658 GGTTAGGCCCGGAGGTGGAGCGGCGATTTGTTCGGTAGAGTTTGATCCATTCGGTGGATC 717
Query 721 TTCCATAGCCGTTGGATGTGCTGACCGGAATGCCTACGTGTATGACATCAGAAGACTAGT 780
||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||
Sbjct 718 TTCTTTAGCCGTTGGATGTGCTGACCGGAATGCTTACGTGTACGACATCAGACGACTCGT 777
Query 781 GGACCCTTTGATCGTATTAGACGGCCATACCAAAACGGTGACGTATGCTCGATTCATGGA 840
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 778 TGACCCTTTGATCGTATTAGACGGTCATACCAAAACGGTGACGTATGCTCGGTTCTTGGA 837
Query 841 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 897
Query 901 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTGAATAGCCGGAACTTTGTTGGGTT 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTTAATAGCCGGAACTTTGTTGGGTT 957
Query 961 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCCGGGTCAGAGAATAACCAAGTGTTTGT 1020
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 958 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCTGGGTCGGAGAATAACCAAGTGTTTGC 1017
Query 1021 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCATAC-GAACCGGT 1079
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 1018 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCA-ACCGGACCGGT 1076
Query 1080 TTG-GATCTGACCGACGGTTTGTTAGTAGTGTGTGTTTGAGACAAGTGGATGAAGATTGG 1138
||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1077 TTGAGG-CTGACCGACGGTTTGTGAGTAGTGTTTGTTTGAGACAAGTGGATGAAGACTGG 1135
Query 1139 TGCACACTTG-TGGCCGGAGGATCCGATGGGGCTTTAGAAATTTTCTCGGGCAAACAAAG 1197
|||||||||| || | ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1136 TGCACACTTGCTG-CTGGAGGATCCGATGGGGCTTTAGAGATTTTCTCGGGCAAACGGAG 1194
Query 1198 CTAATCAGTATTTATATTAtttttttCTGCTCATGATTAATACAAACTGTTTTTCAGTTG 1257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 CTAATCAGTATTTATATTATTTTTTTCTGCTCATGATTGATACAAACTGTTTTTCAGTTG 1254
Query 1258 ATTTTATA--CTGTCTATAGTTATTAATTTTAATATGATTGAATGTTACTAC 1307
|||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1255 ATTTTATAAACGGTCTATAGTTATTAATTTTAATTTGATTGAATGTTACTAC 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5