BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52260.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1 1375 0.0
Ahg354228 jgi|Araly1|354228|fgenesh1_pg.C_scaffold_7001401 416 1e-115
> Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1
Length=870
Score = 1375 bits (744), Expect = 0.0
Identities = 829/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGACCAAATCTGGAGAGAGACCAAAACAGAGACAGAGGAAAGGGTTATGGTCACCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCAAATCTGGAGAGAGACCAAAACAGAGACAGAGGAAAGGGTTATGGTCACCTGAA 60
Query 61 GAAGACCAGAAGCTCAAGAGTTTCATCCTCTCTCGTGGCCATGCTTGCTGGACCACTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACCAGAAGCTCAAGAGTTTCATCCTCTCTCGTGGCCATGCTTGCTGGACCACTGTT 120
Query 121 CCCATCCTAGCTGGATTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCATCCTAGCTGGATTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTAC 180
Query 181 CTAAGACCAGGACTAAAGAGGGGGTCGTTTAGTGAAGAAGAAGAAGAGACCATCTTGACT 240
||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGGCCAGGATTAAAGAGAGGGACGTTTAGTGAAGAAGAAGAAGAGACCATCTTGACT 240
Query 241 TTACATTCTTCCTTGGGTAACAAGTGGTCTCGGATTGCAAAATATTTACCGGGAAGAACA 300
|||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 241 TTACATGCTTCCTTGGGTAACAAGTGGTCGCGGATTGCAAAATACCTACCTGGAAGAACA 300
Query 301 GACAACGAGATTAAGAACTATTGGCATTCCTATCTGAAGAAGAGATGGCTCAAATCTCAA 360
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 301 GACAACGAGATTAAGAACTACTGGCACTCTTATCTGAAGAAGAGATGGCTCAAATCTCAA 360
Query 361 CCACAACTCAAAAGCCAAATATCAGACCTCACAGAATCT-C-C-TTCTTCACTACTTTCT 417
||||| ||||||| ||||| ||||||||||||||| ||| | | ||||||||||||||||
Sbjct 361 CCACAGCTCAAAACCCAAAGATCAGACCTCACAGACTCTTCTCCTTCTTCACTACTTTCT 420
Query 418 TGCGGGAAAAGAAATCTGGAAACCGAAACCCTAGATCACGTGATCTCCTTCCAGAAATTT 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCGGGAAAAGAAATCCGGAAACCGAAACCCTAGATCACGTGATCTCCTTCCAGAAATTT 480
Query 478 TCAGAGAATCCAACTTCATCACCATCCAAAGAAAGCAACAACAACATGATCATGAACAAC 537
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 481 GCAGAGAAGCCAACTTCATCACCATCCAAAGACAGCAATAACAACATGATCATGAACAAC 540
Query 538 AGTAATAACTTGCCTAAACTGTTCTTCTCTGAGTGGATCAGTTCTTCAAATCCACACATC 597
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AGTAATAACTTACCTAAACTGTTCTTCTCCGAGTGGATCAGTTCTTCAAATCCACACATC 600
Query 598 GATTACTCCTCTGCTTTTACAGATTCCAAGCACATTAATGAAACTCAAGATCAAATCAAT 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 601 GATTACTCCTCTGCTTTTACAGATTCTAAGCACATTAATGAAACTCAAGATCAAATCGAT 660
Query 658 GAAGAGGAAGTGATGATGATCAATAACAACAAC---TACTCTTCACTTGAGGATGTCATG 714
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GAAGAAGAAGTGATGATGATCAATAACAACAACAACTACTCTTCACTTGAGGATGTCATG 720
Query 715 CTCCGTACAGATTTTTTGCAGCCTGATCATGAATATGCAAATTATTATTCTTCTGGAGAT 774
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 721 CTCCGTACAGAGTTTTTGCAGCCTGATCATGAGTATGCAAATTATTATTCTTCTGGGGAT 780
Query 775 TTCTTCATCAACAGTGACCAAAATTATGTCTAAGAAGAGTGAATATGATCGTAAGAGGAA 834
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 781 TTCTTCATCAACAATGACCAAAATTATGTCTAAAAAAAGTGAATATGATCGTAAGAGGAA 840
Query 835 CATAAGCTAGTTACTTGTGTTACAAGTTAC 864
||||| | |||||||||| |||||||||||
Sbjct 841 CATAAACAAGTTACTTGTATTACAAGTTAC 870
> Ahg354228 jgi|Araly1|354228|fgenesh1_pg.C_scaffold_7001401
Length=789
Score = 416 bits (225), Expect = 1e-115
Identities = 499/626 (80%), Gaps = 40/626 (6%)
Strand=Plus/Plus
Query 29 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGACCAGAAGCTCAAGA-GTTTCATC 87
||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||
Sbjct 23 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGATGAGAAGCT-AAGAAGCTTCAAA 81
Query 88 CTCTCTCGTGGCCATGCTTGCTGGACCACTGTTCCCATCCTAGCTGGATTGCAAAGGAAT 147
||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 82 CTCTCTCATGGCCATTCTTGCTGGACCACTGTTCCCATCAAAGCTGGGTTGCAAAGGAAT 141
Query 148 GGGAAAAGCTGCAGATTAAGGTGGATTAATTACCTAAGACCAGGACTAAAGAGGGGG-TC 206
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 142 GGGAAAAGCTGCAGATTAAGATGGATTAATTACCTAAGACCAGGGTTAAAGAGGGATAT- 200
Query 207 GTTTAGTGAAGAAGAAGAAGAGACCATCTTGAC-TTTACATTCTTCCTTGGGTAACAAGT 265
| |||||| |||||||||||| ||||||||||| ||| ||||||| ||||||||| ||||
Sbjct 201 GATTAGTGCAGAAGAAGAAGATACCATCTTGACGTTT-CATTCTTTCTTGGGTAATAAGT 259
Query 266 GGTCTCGGATTGCAAAATAT-TTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 324
|||| | || ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 260 GGTCGCAAATCGCAAAGT-TCTTACCGGGAAGAACAGACAATGAGATAAAGAACTATTGG 318
Query 325 CATTC-CTATCTGAAGAAGAGATGGCTCAAATCTCA-ACCACAACTCAAAAGCCAAATAT 382
|| || | || |||| |||||||||||||| ||||| | | | | || | ||||| ||
Sbjct 319 CACTCTC-ATTTGAAAAAGAGATGGCTCAAGTCTCAGAGCTTA-C--AACATCCAAA-AT 373
Query 383 CAGA--CCTCA-CAGAATC-TCCTTCTTCACTACTTTCTTGCGGGAAAAGAAATCTGGAA 438
| | |||| | ||| || | | ||||| || |||| || |||||||||| ||||
Sbjct 374 CTGTTTCCTCTTCTTCATCATCAT-CATCACTTGTTGCTTGTGGAAAAAGAAATCCGGAA 432
Query 439 ACCGAAACCC-TAGATCACGTGATCTCCTTCCAGAAATTT-TCAGAGAATCCAA-CTTCA 495
||| | | | ||||| |||||||||||||||| | || | |||| | | || ||||
Sbjct 433 ACCTTGATCTGT-GATCAGGTGATCTCCTTCCAGAGACTTCT-AGAGGA-CAAATCTTCG 489
Query 496 TCACCATC-CAAAGAAAGCAAC--AAC-AACA-TGATCA-TGAACAACAG-TAAT-A-AC 546
|| ||||| ||| ||||||||| || |||| | |||| || | | | | | | |
Sbjct 490 TCTCCATCACAA-GAAAGCAACGGAAATAACAGTTATCAATGTTCTTCTGCTCCTGAGA- 547
Query 547 TTGCCTAAA-CTGTTCTTCTCTGAGTGGATCAGTTCTTCAAATCCACACATCGATTACTC 605
|| || || || ||||||||||| ||| | |||||| |||| || |||||||| ||
Sbjct 548 TT-CC-AAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCGGATCCCCATATCGATTATTC 605
Query 606 CTCTGCTTTTACAGATTCCAAGCACA 631
||||| ||||| ||| || |||||||
Sbjct 606 CTCTGATTTTATAGACTCTAAGCACA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5