BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52270.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495296 jgi|Araly1|495296|fgenesh2_kg.8__1112__AT5G52270.1 876 0.0
> Ahg495296 jgi|Araly1|495296|fgenesh2_kg.8__1112__AT5G52270.1
Length=639
Score = 876 bits (474), Expect = 0.0
Identities = 586/641 (91%), Gaps = 4/641 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAACTAACAATAGTTGGTAGGGTTGAAGATGGATTGCCTCTTGCACAAGATCAA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAAACTAACGATAGTTGGTAGGGTTGAAGATGGATTGCCTCTTGCCCAAGATCAA 60
Query 61 ACCTATGTCAACCAAGAGGACAATACTAGTTTCTTGCTGTACAAGCAACAAGCAGAATTT 120
|||||||| |||||| | ||||| ||||||||||| | |||||| ||||||| |||||
Sbjct 61 ACCTATGTAAACCAACAAGACAACGCTAGTTTCTTGTTATACAAGAAACAAGCCGAATTC 120
Query 121 CTTCTTAAACAAGTCTCCAAAGACTCATTATTACATCCAAAGATGACCATCTTGCTCGAT 180
|||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 CTTCTTAAGCAAATCTCCAAAGACTCATTGTTGCATCCAAAGATGACCATCTTGCTCGAT 180
Query 181 CATCATTCTTTCCACTTCCTGGTGGAGAAGAAGATATGTTACATCGCGCTATCTGATTCT 240
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CATCATTCTTTCCATTTCCTGGTGGAGAAGAAGATATGTTGCATCGCGCTATCTGATTCT 240
Query 241 TCATATCCAAGAAAGCTATTGTTTAATTACTTGCAGAATCTGAACAAGGAGCTTGATAAG 300
|| || |||||||||||||||||| ||||| ||||| ||||| |||||| |||||| ||
Sbjct 241 TCGTACCCAAGAAAGCTATTGTTTCATTACCTGCAGGATCTGCGCAAGGAACTTGATCAG 300
Query 301 CTGGACGAGAAAGCACTGATCCAGAAAATCTCAAAGCCCTATAGCTTCATTAGGTTTGGT 360
| || |||| ||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct 301 CCCGATGAGACAGCACTGATTCAGAAAATCTCAAAACCTTATAGCTTCGTTAGGTTTGGT 360
Query 361 AAGATCATAGGGAGAATAAGAAAACAATATATAGACACGAGAACACAAGCTAATCTATCG 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 AAGATCATAGGGAGAATAAGGAAACAATATATGGACACGAGAACACAAGCTAATCTATCG 420
Query 421 AAGCTGAATGCATT-GCGGAAACAAGAACTCGATGTAGTTACTGAGCATTTGAATGATAT 479
||||||||| | || |||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 421 AAGCTGAATTC-TTCACGGAAACAAGAACTAAATGTAGTCACTGAGCATTTTAATGATAT 479
Query 480 AATACAAAGACAACAAATTTTAGGCGTCCTCAGATCCTCCAATGAT-TGTTTCAACCATT 538
||||||||||| ||||||||||||||||||||||||| | |||| | |||||||||||||
Sbjct 480 AATACAAAGACGACAAATTTTAGGCGTCCTCAGATCCACGAATG-TCTGTTTCAACCATT 538
Query 539 TGGAGCTCACGATGTCTTCAGGATATTTCGTTAAAATGGACACCAGTGACGATTATTATT 598
||||| ||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 539 TGGAGATCACGATGTCTTCAGGATATTGCTTTAAAATGGACACCAGTGACGACCATTATT 598
Query 599 CTCGTTATTCTTGTTCTTTTCAAAGCAAGCTTGATTATGAC 639
|||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCGTTATTCTTGTTCTTTTCAAAGCAAGCTTGATTATGAC 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5