BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52300.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1 1585 0.0
Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3 582 3e-165
Ahg949787 jgi|Araly1|949787|scaffold_801674.1 361 1e-98
Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1 52.8 1e-05
> Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1
Length=1707
Score = 1585 bits (858), Expect = 0.0
Identities = 1096/1210 (91%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 850 CTGCTCCAGGAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTA 909
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 511 CTGCTCCAGGAGGAGGTTCGGATTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTA 570
Query 910 CTGATCCCACGCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTA 969
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 571 CTGATCCCACTCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTC 630
Query 970 GAATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACT 1029
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 631 GGATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACT 690
Query 1030 TTCCGACGAGAAGCCATGAGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTC 1089
| |||||||||||||| || |||| ||||||||| ||||||||||||| |||| ||||||
Sbjct 691 TACCGACGAGAAGCCAAGAATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTC 750
Query 1090 CGGCAAGATTTGGAGGGGAATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAG-AG- 1146
|||||||| ||||||| ||||||| |||||| | || ||||||||||| || ||| ||
Sbjct 751 CGGCAAGACTTGGAGGAGAATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGT 809
Query 1147 G-TGATGTGAAAGTAGAGAGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAG 1205
| ||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 810 GATGATGTGAAAGCAGAGACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAG 869
Query 1206 TTCTCACCAGAACTATCTCGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAG 1265
|||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 870 TTCTCACCGGAACTATCTCGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAG 929
Query 1266 TCGACACATGAGACAAAACCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 1325
||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 930 ACGAAACAGGAGAGGAAACCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 989
Query 1326 ATAACTAACAAAGCTATAGCCGCAAAGAACGTCGTTGCCTCAAAGCTAGGTTACACCGGA 1385
||||| |||||||||||||| || ||||||||||| |||||||||||||||| | ||||
Sbjct 990 ATAACCAACAAAGCTATAGCGGCTAAGAACGTCGTCGCCTCAAAGCTAGGTT--A-CGGA 1046
Query 1386 GAGAA-TGGCGGCGGGCAA-AGCGAGAGCCCTGTAAAA-GATGAAACTCCGAGATCTGTT 1442
|| || |||||||||||| | ||| ||| ||| |||| |||||||||||||| |||| |
Sbjct 1047 GA-AAGCGGCGGCGGGCAATA-CGAAAGCGCTG-AAAAGGATGAAACTCCGAGGTCTGCT 1103
Query 1443 ACTGCTTACGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTTTACGAA 1502
|| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1104 ACGGGTTATGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTCTACGAA 1163
Query 1503 AAAGTCAAAGAAACAGGATCAACGGTGATGACAAAGCTACCTCTCTCCGGAGGTGGAAGT 1562
|| |||||||| ||||||||| | |||||||| ||||||||| |||||||||||||||||
Sbjct 1164 AAGGTCAAAGAGACAGGATCAGCCGTGATGACGAAGCTACCTATCTCCGGAGGTGGAAGT 1223
Query 1563 GGAGTGAAGGAGACGCAACAAGGGGAAGAGAAAGGTGTGACGGCTAAAAATTATATATCA 1622
||| ||||||||||||||||||| ||||||||||||||| || ||| | ||||| ||||
Sbjct 1224 GGAATGAAGGAGACGCAACAAGGTGAAGAGAAAGGTGTGTCGACTAGAGATTATCTATCG 1283
Query 1623 GAGAAGCTGAAACCTGGAGAAGAGGACAAAGCTTTATCGGAAATGATAGCTGAGAAACTT 1682
|||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1284 GAGAAGCTGAGACCTGGAGAAGATGACAAAGCTTTATCGGAGGTGATAGCTGAGAAACTT 1343
Query 1683 CATTTTGGAGGAGGAGGAGAGAAGAAGACAACGGCTACAAAGGAGGTGGAAGTGACGGTT 1742
||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 1344 CATTTTGGAGGAGGA-GA-A-AAGAAGACAACGGCGACAAAGGAGGTGGAAGTGACGGTG 1400
Query 1743 GAGAAGATACCTTCCGACCAGATAGCGGAGGGGAAAGGACATGGTGAGGCGGTTGCAGAG 1802
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| | |||
Sbjct 1401 GAGAAGATACCTTCCGACCAGATATCGGAGGGGAGAGAACATGGTGAGGCGGTTACTGAG 1460
Query 1803 GAAGGAAAAGGTGGAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1862
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GAAGGGAAA---GAAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1517
Query 1863 GGTGGTAAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1922
|||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1518 GGTGGTAAGCCGAAATCGCCACATTCAGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1577
Query 1923 GTTGGGACTATGGGGTTTTCGGATTCCGGTGGAAGTGAGTTGGGAGGCAGTGGCGGAGGT 1982
|||||||||||||||||| |||||||| |||||||| ||||||| || | |||||||| |
Sbjct 1578 GTTGGGACTATGGGGTTTACGGATTCCAGTGGAAGTAAGTTGGGTGGTACTGGCGGAGCT 1637
Query 1983 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGgttttgcttttgaatgtttgtgtt 2042
||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||
Sbjct 1638 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGGTTTTTCCTTCGAATGTCTGTGTT 1697
Query 2043 tttgtatgat 2052
||||||||||
Sbjct 1698 TTTGTATGAT 1707
Score = 760 bits (411), Expect = 0.0
Identities = 484/519 (93%), Gaps = 5/519 (1%)
Strand=Plus/Plus
Query 80 AAGAAAACAACACTAGAACAAAGAGGGTTTGATTGATTCACTTG-AAAAAGAGAAAACAC 138
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1 AAGAAAACAACGCTAGAACAAAGAGAGTTTGATTGATTCACTTGAAAAAAGAGAAAACAC 60
Query 139 AGCTTTGGAAAATGGAGTCACAGTTGACACGTCCTTATGGTCATGAGCAAGCAGAAGAAC 198
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGCTTTGGAAAATGGAGTCGCAGTTGACACGTCCTTATGGTCATGAGCAAGTAGAAGAAC 120
Query 199 CAATCAGAATTCACCATCCAGAAGAAGAAGAGCATCATGAGAAGGGAGCATCCAAAGTGT 258
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||
Sbjct 121 CAATCAGAATTCACCATCCTGAGGAAGACGAGCATCATGATAAGGGAGCATCTAAAGTGT 180
Query 259 TGAAG-AAAGTAAAAGAAAAGGCTAAGAAAATCAAGAACAGTCTCACTAAACATGGAAAT 317
| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 181 T-AAGAAAAGTAAAAGAAAAAGCTAAGAAGATCAAGAACAGTCTCACTAAACATGGCAAT 239
Query 318 GGTCATGATCACGATGTGGAAGATGATGATGATGAGTATGACGAGCAAGACCCAGAAGTT 377
||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 240 GGTCATGATCACGATGTTGAAGAAGAAGAAGATGAGTATGACGAGCAAGACCCAGAAGAG 299
Query 378 CACGGCGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAG 437
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CACGGAGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTGAG 359
Query 438 TCTCTTA-GTCATGCCGGAGAAACTAATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGG 496
||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 360 TCT-TTAAGTCATACCGGAGAAACTAATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGG 418
Query 497 GACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCAAACCCATTGAGCCTGTATCATT 556
||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 419 AACAAAGGTTTTTCCTGTCGTGTCTTCCGAGCACACCAAACCCATTGAGCCTGTTTCATT 478
Query 557 ACAAGATACCTCTTACGGACATGAGGCACTGGCTGATCC 595
||||||||||||||||||||||||||||||| ||| |||
Sbjct 479 ACAAGATACCTCTTACGGACATGAGGCACTGTCTGCTCC 517
> Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3
Length=831
Score = 582 bits (315), Expect = 3e-165
Identities = 406/450 (90%), Gaps = 5/450 (1%)
Strand=Plus/Plus
Query 928 GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGAATGAAAGTGACTGATG 987
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 383 GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGACTGATG 442
Query 988 AGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACTTTCCGACGAGAAGCCATG 1047
||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |
Sbjct 443 AGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACTTACCGACGAGAAGCCAAG 502
Query 1048 AGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTCCGGCAAGATTTGGAGGGG 1107
| |||| ||||||||| ||||||||||||| |||| |||||||||||||| ||||||| |
Sbjct 503 AATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTCCGGCAAGACTTGGAGGAG 562
Query 1108 AATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAGA-G-G-TGATGTGAAAGTAGAG 1163
|||||| |||||| | || ||||||||||| || |||| | | ||||||||||| ||||
Sbjct 563 AATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGTGATGATGTGAAAGCAGAG 621
Query 1164 AGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAGTTCTCACCAGAACTATCT 1223
| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 622 ACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAGTTCTCACCGGAACTATCT 681
Query 1224 CGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAGTCGACACATGAGACAAAA 1283
||||| |||||||||||||||| ||||||||||| ||||||| ||| ||| |||| |||
Sbjct 682 CGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAGACGAAACAGGAGAGGAAA 741
Query 1284 CCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACTAACAAAGCTATA 1343
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 742 CCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACCAACAAAGCTATA 801
Query 1344 GCCGCAAAGAACGTCGTTGCCTCAAAGCTA 1373
|| || ||||||||||| ||||||||||||
Sbjct 802 GCGGCGAAGAACGTCGTCGCCTCAAAGCTA 831
Score = 427 bits (231), Expect = 1e-118
Identities = 288/315 (91%), Gaps = 5/315 (2%)
Strand=Plus/Plus
Query 284 GAAAATCAAGAACAGTCTCACTAAACATGGAAATGGTCATGATCACGATGTGGAAGATGA 343
||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||
Sbjct 51 GAAGATCAAGAACAGTCTCACTAGACATGGCAATGGTCATGATCACGATGTTGAAGAAGA 110
Query 344 TGATGATGAGTATGACGAGCAAGACCCAGAAGTTCACGGCGCACCAGTGTATGAATCCTC 403
|| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 111 AGAAGATGAGTATGACGAGCAAGACCCAGAAGAGCACGGAGCACCA---TATGAATCCTC 167
Query 404 TGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAGTCTCTT-AGTCATGCCGGAGAAACTA 462
|||||| |||||||||||||||||||||||| ||||| || |||||| ||||||||||||
Sbjct 168 TGCCGTAAGAGGTGGTGTAACGGGTAAACCTGAGTCT-TTAAGTCATACCGGAGAAACTA 226
Query 463 ATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTT 522
||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 227 ATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGGAACAAAGGTTTTTCCTGTCGTGTCTT 286
Query 523 CTGACCACACCAAACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGG 582
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 287 CCGAGCACACCAAACCCATTGAGCCTGTTTCATTACAAGATACCTCTTACGGACATGAGG 346
Query 583 CACTGGCTGATCCTG 597
||||| ||| |||||
Sbjct 347 CACTGTCTGCTCCTG 361
> Ahg949787 jgi|Araly1|949787|scaffold_801674.1
Length=2370
Score = 361 bits (195), Expect = 1e-98
Identities = 318/373 (85%), Gaps = 26/373 (7%)
Strand=Plus/Plus
Query 683 AGG-AGAGAGCAGAGAGGCTCATCAAGAGCCATTGAACACTCCTGTGTCTCTGCTTTCAG 741
||| ||||||||||||||||||||| ||| || || ||||| | |||||||||| |
Sbjct 452 AGGAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACACT-C-----CTCTGCTTTCTG 505
Query 742 CAACAGAGGACGTGACTAGGACGTTTGCTCCTGGTGGTGAAGATGACTATCTCGGTGGTC 801
| |||||||| | || |||||||||||||||| |||||||||||| ||||| | |||||
Sbjct 506 CGACAGAGGATATCACGAGGACGTTTGCTCCTGCTGGTGAAGATGATTATCTTGATGGTC 565
Query 802 AACGGAAAGTCAACGTCGAGACGCC-A-AAACGTTTGGAGGAAGATCCGGCTGC-TCCAG 858
||||||||||||||| |||||| || | || | |||||||||||||||||| | | |||
Sbjct 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-G-TTGGAGGAAGATCCGGCT-CTTACAG 622
Query 859 GAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCA 918
||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 623 GAGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCA 682
Query 919 CGCATA-AAGG---TGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGA-AT 973
| || | |||| |||||||||| ||||||| |||||| ||||||||||||||| | ||
Sbjct 683 C-CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTA-ATAT 740
Query 974 GAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAG-ACAAGGACGCGAA-GAAGACTT- 1030
||||||||||||||||||||||||||||||| |||| ||||||| ||| || |||||
Sbjct 741 GAAAGTGACTGATGAGTCTCCTGATCAGAAA-CAAGCACAAGGATTTGAAAGA-GACTTG 798
Query 1031 TCCGACGAGAAGC 1043
|| ||||||||||
Sbjct 799 TC-GACGAGAAGC 810
Score = 243 bits (131), Expect = 6e-63
Identities = 195/226 (86%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 417 GGTGTAACGGGTAAACCTA-AGTCTCTTAGTCATGCCG-GAGAAACTAATGTTCCGGCAT 474
||||||| |||||||| | ||||||| |||||| ||| ||||||||||||||||||||
Sbjct 247 GGTGTAAAAGGTAAACC-AGAGTCTCTGAGTCAT-CCGAGAGAAACTAATGTTCCGGCAG 304
Query 475 CGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCA 534
|||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 305 CGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTCCGATTACACCA 364
Query 535 AACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGGCACTGGCTGATC 594
|||||| ||| ||||| ||| ||| ||||||||||||||||| || |||| |||| ||
Sbjct 365 AACCCACTGAATCTGTACCATCACAGGATACCTCTTACGGACACGATGCACCGGCTCATT 424
Query 595 CTGTAAGAACGACGGAAACATCGGACTGGGAAGCGAAAAGAGAGGC 640
|||||||||||||||| ||||||| | ||||| || ||||||||
Sbjct 425 CTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGAGGC 470
Score = 75.0 bits (40), Expect = 2e-12
Identities = 55/62 (89%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 1866 GGT-AAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACCGT 1924
||| || ||||| ||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 2265 GGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTCAACCGT 2324
Query 1925 TG 1926
||
Sbjct 2325 TG 2326
> Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1
Length=2012
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 888 TCTAATTATCAGTCCAAAGTTACTGATC 915
||||||||||||||||||||||||||||
Sbjct 906 TCTAATTATCAGTCCAAAGTTACTGATC 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5