BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52320.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495302 jgi|Araly1|495302|fgenesh2_kg.8__1118__AT5G52320.1 2547 0.0
Ahg475591 jgi|Araly1|475591|fgenesh2_kg.2__721__AT1G65340.1 1038 0.0
Ahg907906 jgi|Araly1|907906|Al_scaffold_0002_987 791 0.0
Ahg925517 jgi|Araly1|925517|scaffold_201078.1 747 0.0
Ahg338681 jgi|Araly1|338681|fgenesh1_pg.C_scaffold_2000780 728 0.0
> Ahg495302 jgi|Araly1|495302|fgenesh2_kg.8__1118__AT5G52320.1
Length=1662
Score = 2547 bits (1379), Expect = 0.0
Identities = 1576/1670 (94%), Gaps = 18/1670 (1%)
Strand=Plus/Plus
Query 1 ACTCATATGAAAATCCATTA-TTTTGTTTGACCaaaaaaaaaaaaaTCATTTTTGTG-TG 58
||||||| ||||||||||| ||||| |||| | |||||||| || || |||||||| ||
Sbjct 1 ACTCATACAAAAATCCATTATTTTTG-TTGA-CTAAAAAAAACAACTCCTTTTTGTGTTG 58
Query 59 CAATAATGGCGATGATCATAGGCTTACTTGAAATCTTCATCGCATTCATTTTCTTCTTTG 118
||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 59 -AATAATGGCTTTGATCATAGGCTTACTTGAAATCTTCATAACCTTCATTTTCTTCCTTG 117
Query 119 TCTACCAGTGTTTCTCGCTCCACAAGAAAACTCCAAAGCATATGGTCATGAACTGGCCGG 178
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 118 CCTACCAGTGTTTCTCGCTCCACAAGAAAACTCCAAAGCATATGGTTACGAACTGGCCGG 177
Query 179 TCCTTGGGATGCTTCCGGGTGTGCTCTTCCAAATCCCTCGTATCTACGACTTTGTTACGG 238
||||||||||||||||||||||| || |||| ||||||||| |||| ||||| || || |
Sbjct 178 TCCTTGGGATGCTTCCGGGTGTGGTCCTCCACATCCCTCGTGTCTATGACTTGGTCACTG 237
Query 239 AGGCTCTTGAGGCAGAAAATATGACGGGTTGTTTCATAGGGCCATGGCTTAGTGGAACAG 298
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 AGGCTCTTGAGGGAGAAAATATGACGGGTTGTTTCATAGGGCCATGGTTTAGTGGAACAG 297
Query 299 ACATATTGCTCACTGTTGACCCGGTGAATATCCAGTATATTCTAAGTTCAAACTTCGTGA 358
||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 298 ACATATTAATCACTGCTGACCCGGTGAATATCCAGTACATTCTAAGTTCAAACTTCGTTA 357
Query 359 ATTACCCCAAAGGGAAGAAGTTTAACAAGATCTTTGAATTCTTGGGAGATGGGATTTTCA 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTACCCTAAAGGGAAGAAGTTTAACAAGATCTTTGAATTCTTGGGAGATGGGATTTTCA 417
Query 419 ACGTTGACTCGGGCTTGTGGGAGGATATGAGAAACTCGTCTCATGCGATTTTCAGCCATC 478
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 ACGTTGACTCGGGTTTGTGGGAGGATATGAGAATCTCGTCTCATGCGATTTTCAGCCATC 477
Query 479 AAGATTTCCAAAGTTTTTCGGTGAGTACAAGCGTAAGCAAATTAAGTCAAGGGCTTGTTC 538
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 478 AAGATTTCCAAAGTTTTTCGGTGAGCACAAGCGTAAGCAAATTAAGGCAAGGGCTTGTTC 537
Query 539 CTATTCTTGATAACGCTGTTGAGAAACACATTCTTGTCGACTTGCAAGATTTGTTCCAGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 CTATTCTTGATAACGCTGTTGAGAAACACATTCTTGTCGACTTGCAAGATGTGTTCCAGA 597
Query 599 GATTCTTGTTTGACACATCTTCTACTTTGATGGCTGGGTATGATCCAAAATCTCTCTCCG 658
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 598 GATTCTTGTTTGACACATCTTCGACTTTGATGACTGGGTATGATCCAAAATCTCTCTCCA 657
Query 659 TTGAAATGCCTAAGGTTGAGTTCGCTGATGCGATGGATGGAGTTGCAGATGCCATGTTCT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 TTGAAATGCCTAAGGTTGAGTTCGCTGATGCGATGGATGGAGTTGCAGATGCGATGTTCT 717
Query 719 ATAGACATCTCAAGCCGGCTTTCCTGT-GGAGTATCCAATCTTGGATCGGTGTAGGAATA 777
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 718 ATAGACATCTCAAGCCGGCTTTCCTGTGGGAG-CTCCAATCTTGGATCGGTGTAGGAGTA 776
Query 778 GAGAAGAAGATGAGAAGAGGTCTCGAC-GTTTTCGATCAAATGCTAGGGAAGATCATATC 836
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 777 GAGAAGAAGATGAGAAGAGGTCTCG-CGGTTTTCGATCAAATGCTAGGGAAGATCATATC 835
Query 837 AGCTAAACGAGAGGAGATCAAAAATCATGGGATTCATGACTC-AAAAG-GA-GAGGCCAT 893
|||||||||||||||||||||| |||||||||||||||||| ||| | || ||||||||
Sbjct 836 GGCTAAACGAGAGGAGATCAAAAGTCATGGGATTCATGACTCGAAAGGAGAGGAGGCCAT 895
Query 894 GGACGTTTTAACATATTACATGACTATAGACACGACCAAATATAAACACTTGAAACCGAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGACGTTTTAACATATTACATGACTATAGACACGACCAAATATAAACACTTGAAACCGAG 955
Query 954 TAACGATAAATTCATCAGAGACACTATTTTGGGTCTTGTGATAGCGGCAAGAGACACAAC 1013
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 956 TAACGATAAATTCATCAGAGACACTATTTTGGGTTTTTTGATAGCGGCAAGAGACACAAC 1015
Query 1014 CAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCTCTCTAAGAACCCTGAAGCAATGACCAA 1073
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAGATCAGCTCTCACTTGGTTATTCTGGCTTCTCTCTAAGAACCCTGAAGCAATGACCAA 1075
Query 1074 GATCCGACAAGAGATTAACAAGAAGATGCCAAAGTTTGATCCGGCAGATTTAGACAAGCT 1133
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1076 GATCCGACAAGAGATTAACAAGAAGATGCCAAAGTTTAATCCCGCAGATTTAGACAAGCT 1135
Query 1134 CGTGTACCTAGACGGTGCCGTGTGTGAGACGCTAAGGCTATACCCATCAGTCCCATTCAA 1193
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1136 CGTGTATCTAGATGGTGCCGTGTGTGAAACGCTAAGGCTATACCCATCAGTCCCATTTAA 1195
Query 1194 CCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGTCATAAAGTTGATAAGAATTG 1253
|||||||||||||||||||||||| || ||||||||||| |||| ||| ||| |||||||
Sbjct 1196 CCACAAGTCACCGGCAAAGCCAGATGTTCTTCCAAGTGGGCATAGAGTCGATGAGAATTG 1255
Query 1254 GAGGGTAGTAATCCCTATTTATT-CATTAGGCAGGATGAAATCTGTTTGGGGAGATGACG 1312
|||||||||||||||||||| || || | || ||||||||||||||||||||||||||||
Sbjct 1256 GAGGGTAGTAATCCCTATTT-TTGCAGTGGGGAGGATGAAATCTGTTTGGGGAGATGACG 1314
Query 1313 CAGAAGATTTTCGACCAGAGAGATGGATTTCAGACAGTGGAATGTTGAGACAAGAGTCTT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1315 CAGAAGATTTTCGACCAGAGAGATGGATTTCAGACAGTGGAATGTTGAGACAAGAATCTT 1374
Query 1373 CATATAAGTTTTTGGCGTTTAACGCTGGTCCAAGAACTTGCTTGGGGAAAAGATTAACAT 1432
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1375 CATATAAGTTTTTGGCATTTAACGCTGGTCCAAGAACTTGCTTGGGGAAAAGGTTAACAT 1434
Query 1433 TCTTGCAGATGAAGACAGTAGCGGTCGAAATCATTAGAAACTATGACATTAAGGTCGTTG 1492
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1435 TCTTGCAGGTGAAGACAGTAGCGGTCGAAATCATAAGAAACTATGACATTAAGGTCGTTG 1494
Query 1493 AAGGGCACAAACCAAAACCAGTTCCTTCCGTTCTTCTTCGCATGCAACATGGTCTCAAAG 1552
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AAGGGCACAAACCCAAACCAGTTCCTTCCGTTCTTCTTCGCATGCAACATGGTCTCAAAG 1554
Query 1553 TTAGTGTCACTAAGATTTAGTGATA-TTTTATTTTTGTTTTATGTTACAATAAAATATTC 1611
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||
Sbjct 1555 TTAGTGTCACTAAGATTTAGTGA-ACTTTTATTTTTGTTTTATGTTA-AATAAAATACTC 1612
Query 1612 CA-TTGTGAAAGAATATTTATGGGTAAAGATTTAGAACCTCATGataata 1660
|| ||||||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct 1613 CAGTTGTGAAAGGAGATTAATGGGTAAAGATTAAGAACCTCATGATAATA 1662
> Ahg475591 jgi|Araly1|475591|fgenesh2_kg.2__721__AT1G65340.1
Length=1380
Score = 1038 bits (562), Expect = 0.0
Identities = 835/966 (86%), Gaps = 21/966 (2%)
Strand=Plus/Plus
Query 378 GTTTAACAAGATCTTTGAATTCTTGGGAGATGGGATTTTCAACGTTGACTCGGGCTTGTG 437
|||||| |||||||||||| || |||| ||| |||||||||||||||||||| |||||
Sbjct 258 GTTTAAGAAGATCTTTGAAGTCGTGGGTGATTCCATTTTCAACGTTGACTCGGGTTTGTG 317
Query 438 GGAGGATATGAGAAACTCGTCTCATGCGATTTTCAGCCATCAAGATTTCCAAAGTTTTTC 497
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 318 GGAGGATATGAGGAACTCGTCTCATGCCATTTTTAGCCATCAAGATTTCCAAAGGTTCTG 377
Query 498 GGTGAGTA-CAAGCGTAAGCAAATTAAGTCAAGGGCTTGTTCCTATTCTTGATAACGCTG 556
|||||| | |||| |||| ||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 378 GGTGAG-AGCAAGTGTAAACAAATTAAGGCAAGGGCTTGTTCCTATTCTTGAGAACACTG 436
Query 557 TTGAGAAACACATTCTTGTCGACTTGCAAGATTTGTTCCAGAGATTCTTGTTTGACACAT 616
||| ||| | |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 437 CTGATAAAAATATTCTTGTAGACTTCCAAGATTTGTTCCAGAGATTCTTGTTTGATACAT 496
Query 617 CTTCT-ACTTTGATGGCTGGGTATGATCCAAAATCTCTCTCCGTTGAAATGCCTAAGGTT 675
||| | | ||||||| | |||||||||||||||| | | ||| ||||||||||||| ||
Sbjct 497 CTT-TGATTTTGATGACCGGGTATGATCCAAAATGTTTATCCATTGAAATGCCTAAAGTC 555
Query 676 GAGTTCGCTGATGCGATGGATGGAGTTGCAGATGCCATGTTCTATAGACATCTCAAGCCG 735
||||| | ||| ||| | ||||| ||| |||| | | |||||||| ||| | ||||||
Sbjct 556 GAGTTTGGTGACGCGGTTGATGGTGTTTCAGACGGGGTTTTCTATAGGCATGTTAAGCCG 615
Query 736 GCTTTCCTGTGGAG-TATCCAATCTTGGATCGGTGTAGGAATAGAGAAGAAGAT-GAGAA 793
| |||||||||||| | |||||| |||||| ||||||||| | |||||| ||| || ||
Sbjct 616 GTTTTCCTGTGGAGGT-TCCAATATTGGATTGGTGTAGGAGTCGAGAAGC-GATTGAAAA 673
Query 794 GAGGTCTCGACG-TTTTCGATCAAATGCTAGGGAAGATCATATC-AGCTAAACGAGAGGA 851
||||||| | || ||||||||||| | || | |||||||||| | | | ||| |||||||
Sbjct 674 GAGGTCTTG-CGGTTTTCGATCAACTTCTTGAGAAGATCATAACGACCAAAA-GAGAGGA 731
Query 852 GATCAAAAATCATGGGA-T--TCATGACTCAAAAGGAGAGGCCATGGACGTTTTAACATA 908
|||||||| |||||||| | |||| |||||| |||||||||||| |||||||| |||||
Sbjct 732 GATCAAAAGTCATGGGACTGATCATCACTCAAGAGGAGAGGCCATAGACGTTTTGACATA 791
Query 909 TTACATGACTATAGACACGACCAAATATAA-ACACTTGAAACCGAGTAACGATAAATTCA 967
||||||||| | ||||||||||| ||||| | |||||||||||||| | ||||||||||
Sbjct 792 CTACATGACTGTGGACACGACCAAGTATAAGA-ACTTGAAACCGAGTGATGATAAATTCA 850
Query 968 TCAGAGACACTATTTTGGGTCTTGT-GATAGCGGCAAGAGACACAACCAGCTCAGCTCTC 1026
||| |||||||||||||||| || | ||||||||||||||||||||| || |||||||||
Sbjct 851 TCAAAGACACTATTTTGGGT-TTCTTGATAGCGGCAAGAGACACAACAAGTTCAGCTCTC 909
Query 1027 ACTTGGTTTTTCTGGCTTCTCTCTAAGAACCCTGAAGCAATGACCAAGATCCGACAAGAG 1086
|||||||| ||||||||||| || ||||||||||||||||||| |||||| |||||||||
Sbjct 910 ACTTGGTTCTTCTGGCTTCTGTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAG 969
Query 1087 ATTAACAAGAAGATGCCAAAGTTTGATCCGGCAGATTTAGACAAGCTCGTGTACCTAGAC 1146
|||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||| ||
Sbjct 970 GTTAACAAGAAGATGCCGAGGTTTAATCCCGCAGATTTAGACAAGCTCGTGTATCTACAC 1029
Query 1147 GGTGCCGTGTGTGAGACGCTAAGGCTATACCCATCAGTCCCATTCAACCACAAGTCACCG 1206
|||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||
Sbjct 1030 GGTGCCGTGTGTGAGACGCTAAGGTTATATCCACCAGTCCCATTTAACCACAAGTCACCG 1089
Query 1207 GCAAAGCCAGACGTGCTTCCAAGTGGTCATAAAGTTGATAAGAATTGGAGGGTAGTAATC 1266
|||| ||||||||||||||||||||| |||||||| ||| ||||||||| | | || ||
Sbjct 1090 GCAATGCCAGACGTGCTTCCAAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATA 1149
Query 1267 CCTATTTATTCATTAGGCAGGATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTTC-G 1325
|||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1150 TCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGGAGATGACGCGGAAGATTT-CAG 1208
Query 1326 ACCAGA 1331
||||||
Sbjct 1209 ACCAGA 1214
> Ahg907906 jgi|Araly1|907906|Al_scaffold_0002_987
Length=1059
Score = 791 bits (428), Expect = 0.0
Identities = 574/644 (89%), Gaps = 11/644 (2%)
Strand=Plus/Plus
Query 935 ATAAAC-ACTTGAAACCGAGTAACGATAAATTCATCAGAGACACTATTTTGGGTCTT-GT 992
||| || |||||||||| ||| | ||||||||||| | |||||||||||||||| || |
Sbjct 421 ATAGACTACTTGAAACCAAGTGATGATAAATTCATTAAAGACACTATTTTGGGT-TTCTT 479
Query 993 GATAGCGGCAAGAGACACAACCAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCTCTCTAA 1052
||||| ||||||||||||||| || ||||||||||||||||| ||||||||||| || ||
Sbjct 480 GATAGTGGCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAA 539
Query 1053 GAACCCTGAAGCAATGACCAAGATCCGACAAGAGATTAACAAGAAGATGCCAAAGTTTGA 1112
||||||||||||||||| |||||| ||||||||| |||||||||||||||| | ||||||
Sbjct 540 GAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGA 599
Query 1113 TCCGGCAGATTTAGACAAGCTCGTGTACCTAGACGGTGCCGTGTGTGAGACGCTAAGGCT 1172
||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 600 TCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTT 659
Query 1173 ATACCCATCAGTCCCATTCAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGG 1232
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATACCCACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGG 719
Query 1233 TCATAAAGTTGATAAGAATTGGAGGGTAGTAATCCCTATTTATTCATTAGGCAGGATGAA 1292
|||||||| ||| ||||||||| | | || || |||| ||| ||||||| ||||||||
Sbjct 720 GCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAA 779
Query 1293 ATCTGTTTGGGGAGATGACGCAGAAGATTTTC-GACCAGAGAGATGGATTTCAGACAGTG 1351
||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||
Sbjct 780 ATCTGTTTGGGGAGATGACGCGGAAGATTT-CAGACCAGAGAGATGGATTTCATACAGTG 838
Query 1352 GAATGTTGAGACAAGAGTCTTCATATAAGTTTTTGGCGTTTAACGCTGGTCCAAGAACTT 1411
||| ||| | ||| || ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 839 GAAGGTTAAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTT 898
Query 1412 GCTTGGGGAAAA-GATTAACATTCTTGCAGATGAAGACAGTAGCGGTCGAAATCATTA-G 1469
||||||| |||| | ||||| |||||||||||||||||||| || || |||||||| | |
Sbjct 899 GCTTGGGAAAAAAG-TTAACGTTCTTGCAGATGAAGACAGTGGCTGTGGAAATCAT-ACG 956
Query 1470 AAACTATGACATTAAGGTCGTTGAAGGGCACAAA-CCAAAACCAGTTCCTTCCGTTCTTC 1528
|||||||||||| ||||||||||||||||||||| || || || |||||||| ||||||
Sbjct 957 AAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAA-CCTGTTCCTTCTGTTCTTT 1015
Query 1529 TTCGCATGCAACATGGTCTCAAAGTTAGTGTCACTAAGATTTAG 1572
||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 1016 TTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 1059
Score = 374 bits (202), Expect = 2e-102
Identities = 342/407 (84%), Gaps = 19/407 (5%)
Strand=Plus/Plus
Query 502 AGTACAAGCGTAAGCAAATTAAGTCAAGGGCTTGTTCCTATTCTTGATAACGCTGTTGAG 561
|||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 28 AGTACAAGTGTAAACAAATTAAGGCAAGGGCTTGTTCCTATTCTTGAGAACGCTGTTGAT 87
Query 562 AAACACATTCTTGTCGACTTGCAAGATTTGTTCCAGAGATTCTTGTTTGACACATCTTCT 621
||| | || |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 88 AAAAATATCCTTGTCGACTTGCAAGATGTGTTCCAGAGATTCTTGTTTGACACATCTT-T 146
Query 622 -ACTTTGATGGCTGGGTATGATCCAAAATCTCTCTCCGTTGAAATGCCTAAGGTTGAGTT 680
| ||||||| | |||||||||||||||| | | || ||||||||||||||||||||||
Sbjct 147 GATTTTGATGTCCGGGTATGATCCAAAATGTTTATCTATTGAAATGCCTAAGGTTGAGTT 206
Query 681 CGCTGATGC-GATGGATGGAGT-T--G-CAGATGCCATGTTCTATAGACATCTCAAGCCG 735
|| ||| || | | ||||| || | | |||| | | |||||||||||| ||||||||
Sbjct 207 CGGTGACGCAG-TAGATGGTGTCTCTGACAGA-GT--T-TTCTATAGACATGTCAAGCCG 261
Query 736 GCTTTCCTGTGGAGTATCCAATCTTGGATCGGTGTAGGAATAGAGAAGAAGAT-GAGAAG 794
| |||| ||||||| |||||| |||||| ||||||||| | ||||| ||||| || |||
Sbjct 262 GTTTTCTTGTGGAGGCTCCAATATTGGATTGGTGTAGGACTCGAGAA-AAGATTGAAAAG 320
Query 795 AGGTCTCGACG-TTTTCGATCAAATGCTAGGGAAGATCATATCAGCTAAACGAGAGGAGA 853
|||||| | || ||||||||||| | || | |||||||||| | |||||| |||||||||
Sbjct 321 AGGTCTTG-CGGTTTTCGATCAACTTCTCGAGAAGATCATAACGGCTAAAAGAGAGGAGA 379
Query 854 TCAAAAATCATGGGATTCA---TGACTCAAAAGGAGAGGCCATGGAC 897
|||||| || ||||| ||| | |||||| |||||||||||| |||
Sbjct 380 TCAAAAGTCTTGGGACTCAACATCACTCAAGAGGAGAGGCCATAGAC 426
> Ahg925517 jgi|Araly1|925517|scaffold_201078.1
Length=671
Score = 747 bits (404), Expect = 0.0
Identities = 544/611 (89%), Gaps = 12/611 (2%)
Strand=Plus/Plus
Query 987 TCTTGTGATAGCGGCAAGAGACACAACCAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCT 1046
||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 67 TCTTGTG-GAGTGGCAAGAGACACAATAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCT 125
Query 1047 CTCTAAGAACCCTGAAGCAATGACCAAGATCCGACAAGAGATTAACAAGAAGATGCCAAA 1106
|| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
Sbjct 126 GTCCAAGAACCCTGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAG 185
Query 1107 GTTTGATCCGGCAGATTTAGACAAGCTCGTGTACCTAGACGGTGCCGTGTGTGAGACGCT 1166
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 186 GTTTGATCCCGCAGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCT 245
Query 1167 AAGGCTATACCCATCAGTCCCATTCAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCC 1226
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 246 AAGGTTATACCCACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCC 305
Query 1227 AAGTGGTCATAAAGTTGATAAGAATTGGAGGGTAGTAATCCCTATTTATTCATTAGGCAG 1286
|||||| |||||||| ||| ||||||||| | | || || |||| ||| ||||||| ||
Sbjct 306 AAGTGGGCATAAAGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAG 365
Query 1287 GATGAAATCTGTTTGGGGAGATGACGCAGAAGATTTTC-GACCAGAGAGATGGATTTCAG 1345
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 366 GATGAAATCTGTTTGGGGAGATGACGCGGAAGATTT-CAGACCAGAGAGATGGATTTCAT 424
Query 1346 ACAGTGGAATGTTGAGACAAGAGTCTTCATATAAGTTTTTGGCGTTTAACGCTGGTCCAA 1405
||||||||| ||| | |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 425 ACAGTGGAAGGTTAAAACAAGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAA 484
Query 1406 GAACTTGCTTGGGGAAAA-GATTAACATTCTTGCAGATGAAGACAGTAGCGGTCG-AAAT 1463
|| |||||||||| |||| | ||||| |||||||||||||||||||| || | || ||||
Sbjct 485 GAGCTTGCTTGGGAAAAAAG-TTAACGTTCTTGCAGATGAAGACAGTGGCTG-CGGAAAT 542
Query 1464 CATTA-GAAACTATGACATTAAGGTCGTTGAAGGGCACAAA-CCAAAACCAGTTCCTTCC 1521
||| | ||||||||||||| ||||||||||||||||||||| || || || ||||||||
Sbjct 543 CAT-ACGAAACTATGACATCAAGGTCGTTGAAGGGCACAAAACCGAA-CCTGTTCCTTCT 600
Query 1522 GTTCTTCTTCGCATGCAACATGGTCTCAAAGTTAGTGTCACTAAGATTTAGTGATA-TTT 1580
|||||| ||||||||||||||||||||||||||| | |||||||||| |||| | | |||
Sbjct 601 GTTCTTTTTCGCATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAGTAACAGTTT 660
Query 1581 TATTTTTGTTT 1591
||||||| |||
Sbjct 661 TATTTTTATTT 671
> Ahg338681 jgi|Araly1|338681|fgenesh1_pg.C_scaffold_2000780
Length=771
Score = 728 bits (394), Expect = 0.0
Identities = 519/579 (90%), Gaps = 10/579 (2%)
Strand=Plus/Plus
Query 999 GGCAAGAGACACAACCAGCTCAGCTCTCACTTGGTTTTTCTGGCTTCTCTCTAAGAACCC 1058
||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 198 GGCAAGAGACACAACAAGTTCAGCTCTCACTTGGTTCTTCTGGCTTCTGTCCAAGAACCC 257
Query 1059 TGAAGCAATGACCAAGATCCGACAAGAGATTAACAAGAAGATGCCAAAGTTTGATCCGGC 1118
||||||||||| |||||| ||||||||| |||||||||||||||| | ||||||||| ||
Sbjct 258 TGAAGCAATGAACAAGATTCGACAAGAGGTTAACAAGAAGATGCCGAGGTTTGATCCCGC 317
Query 1119 AGATTTAGACAAGCTCGTGTACCTAGACGGTGCCGTGTGTGAGACGCTAAGGCTATACCC 1178
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 318 AGATTTAGACAAGCTCGTGTATCTACACGGTGCCGTGTGTGAGACGCTAAGGTTATACCC 377
Query 1179 ATCAGTCCCATTCAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGTCATAA 1238
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 378 ACCAGTCCCATTTAACCACAAGTCACCGGCAAAGCCAGACGTGCTTCCAAGTGGGCATAA 437
Query 1239 AGTTGATAAGAATTGGAGGGTAGTAATCCCTATTTATTCATTAGGCAGGATGAAATCTGT 1298
||| ||| ||||||||| | | || || |||| ||| ||||||| ||||||||||||||
Sbjct 438 AGTCGATGAGAATTGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGT 497
Query 1299 TTGGGGAGATGACGCAGAAGATTTTC-GACCAGAGAGATGGATTTCAGACAGTGGAATGT 1357
||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||| ||
Sbjct 498 TTGGGGAGATGACGCGGAAGATTT-CAGACCAGAGAGATGGATTTCATACAGTGGAAGGT 556
Query 1358 TGAGACAAGAGTCTTCATATAAGTTTTTGGCGTTTAACGCTGGTCCAAGAACTTGCTTGG 1417
| | ||| || ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 557 TAAAACATGAACCTTCATATAAGTTCTTGGCGTTTAACGCTGGTCCAAGAGCTTGCTTGG 616
Query 1418 GGAAAA-GATTAACATTCTTGCAGATGAAGACAGTAGCGGTCG-AAATCATTA-GAAACT 1474
| |||| | ||||| |||||||||||||||||||| || | || ||||||| | ||||||
Sbjct 617 GAAAAAAG-TTAACGTTCTTGCAGATGAAGACAGTGGCTG-CGGAAATCAT-ACGAAACT 673
Query 1475 ATGACATTAAGGTCGTTGAAGGGCACAAA-CCAAAACCAGTTCCTTCCGTTCTTCTTCGC 1533
||||||| ||||||||||||||||||||| || || || |||||||| |||||| |||||
Sbjct 674 ATGACATCAAGGTCGTTGAAGGGCACAAAACCGAA-CCTGTTCCTTCTGTTCTTTTTCGC 732
Query 1534 ATGCAACATGGTCTCAAAGTTAGTGTCACTAAGATTTAG 1572
|||||||||||||||||||||| | |||||||||| |||
Sbjct 733 ATGCAACATGGTCTCAAAGTTAATATCACTAAGATCTAG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5