BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52330.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916864 jgi|Araly1|916864|Al_scaffold_0008_1615 1363 0.0
Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3 976 0.0
Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2 771 0.0
> Ahg916864 jgi|Araly1|916864|Al_scaffold_0008_1615
Length=1197
Score = 1363 bits (738), Expect = 0.0
Identities = 1068/1220 (88%), Gaps = 51/1220 (4%)
Strand=Plus/Plus
Query 89 ATGGCAAAGACTGATGTGGATGATGA--GT-ATGGTCTTAAACCCTCTGAGTTATATGGA 145
|||||| ||||||||||||||||||| | |||| |||||||| ||||| |||| |||
Sbjct 1 ATGGCAGAGACTGATGTGGATGATGATTATGATGGCCTTAAACCTTCTGAATTATTTGGG 60
Query 146 AAAAATACATGGAAGATTAAGAAATTTTCACAAATCAGCAAAAGGGAGTT-CGCTAGC-A 203
||| |||||||||||||| |||||||||||||| || ||||||||||||| || |||| |
Sbjct 61 AAACATACATGGAAGATTGAGAAATTTTCACAAGTCGGCAAAAGGGAGTTCCG-TAGCAA 119
Query 204 GTGTTTTTGAAATTGGAGGCTACAGTTGGCATATTTTAATGTATCCAGAAGGATGTGATG 263
|| |||||| ||| || |||| |||| |||||||||| |||||||||||||||||||
Sbjct 120 TTG-GTTTGAAGCTGGCGGATACAATTGGTATATTTTAATTTATCCAGAAGGATGTGATG 178
Query 264 TTAGCAATCATCTCTCATTATTTCTCTGTGTTGCAAACCATGATGAACTTCTTCCAGGCT 323
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 179 TTAGCAATTATCTCTCATTATTTCTCTGTGTTGCAAACTATGATAAACTTCTTCCAGGCT 238
Query 324 GGAGTCAGTTGGCTCAGTTTACTATATCTGTGATGCATAAAGATCCAAAGAAGTCTAAGT 383
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 GGAGTCAGTTCGCTCAGTTTACTATATCTGTGGTGCATAAAGATCCAAAGAAGTCTAAGT 298
Query 384 TTTCAGATACGCTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAAAAGTTTA 443
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGCAGATACGTTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAAAAGTTTA 358
Query 444 TGGAGTTACCGAAGTTACGGGATGGCTTCATAGATGATTCTGGCTGTCTTACAATTGAAA 503
|||||||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||||
Sbjct 359 TGGAGTTACCCAAGTTACATGATGGGTTCATAGATGATTTTGGCTCTCTTACAATTGAGG 418
Query 504 CTAAAGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTT-CT-T-CCTTGATTATGGTT 560
|| | ||||||||||||||||||||||||||||||||||| | | |||| |||||| ||
Sbjct 419 CTCATGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTTTCGCTGCCTTAATTATGATT 478
Query 561 ACAAGACAGAAATTGTTAGGGTGTATTTTCGAAATATAGAGCAAATTTTCCTACGCTTTG 620
|||||| ||| |||||||||||||||| | |||| ||||||||||||||| ||| ||||
Sbjct 479 ACAAGAAAGAGCTTGTTAGGGTGTATTTGCCAAATGTAGAGCAAATTTTCCGACGTTTTG 538
Query 621 TGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGATAGAGGACAAGGCCAAATGGACAAGCT 680
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 539 TGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGAAAGAGGACAAGGCCAAATGGACAGGCT 598
Query 681 TCGGTGTTTTCTGGTTAGGAATGGACAAAAACTCTAGGCGT-GAGATGTCTAGAGAGAAA 739
| |||| |||||||||||| |||||| |||||||||||| | ||||||||||||||||
Sbjct 599 TTGGTGATTTCTGGTTAGGGATGGACCAAAACTCTAGGCAACG-GATGTCTAGAGAGAAA 657
Query 740 ATGGACGTAATCCTAAAAGGATTTGTAAAACACTTTTTCATGGAAAATGTTGTTACATCA 799
||||||| ||||||||||||| |||||||||||||||||| ||||| | ||| ||||
Sbjct 658 ATGGACGAAATCCTAAAAGGAGTTGTAAAACACTTTTTCAAAGAAAAGGAAGTTTCATCT 717
Query 800 CCTATAGCGATGGATTGCTTGTATAATGGGTTGAAGGATCTTGAAGTCCAAACTAAGAAC 859
||| | | |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 718 CCTGTGGTGATGGATTTCTTGTATAGTGGGTTGAAGGATCTTGAAGGCCAAACTAAGAAC 777
Query 860 AAGAAAGCTAGCCCAAAACTGTTAGATGACAAGGAATTGCCAGCTCCGTTTGTTAAAGTG 919
|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 778 AAGAAAGCTAGCCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCGTTGGTTAACGTG 837
Query 920 GACAGAGATATGTTCGTATTAGTTGATGATGATGTGTTGTTACTCCTAGAGAGGGCTGCA 979
|||| |||||||||| |||||||||||||||||||| ||||||||||| | |
Sbjct 838 GACAAAGATATGTTCCTATTAGTTGATGATGATGTGCTGTTACTCCTA-------C---A 887
Query 980 CTCCTAGAGAGGGCTGCTCCAGAGCCATTGCCTCCGAAAGATGATAAAGCTCTTCAAAAC 1039
||||| |||||| ||||||||||||||| |||||||| || | || ||||||
Sbjct 888 ------GAGAG--CTGCTCTAGAGCCATTGCCTCCAAAAGATGAGAATGGTCCTCAAAAT 939
Query 1040 CGTATTAAGGA-GGACAAGGATGAAGAAGATATCAACAAGGAAGCTTATGAG----AT-A 1093
||||||||||| || ||| |||| |||||| |||||| ||||||||||||| || |
Sbjct 940 CGTATTAAGGATGG-CAATGATGGAGAAGAGGTCAACATGGAAGCTTATGAGCGTGATGA 998
Query 1094 --T--GTTTAAATGAGTGGGGTAGACGAACTGTGGAGATATTTGTTCTTGACCATATCTT 1149
| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 999 GATACGTTTAACTGAGTTGGGTAAACGAACTGTGGAGATATTTGTTCTTGACCATATCTT 1058
Query 1150 TAGCA--AAA-TTGAGGTTGCATA-CAAAGAAGCTATTGCGCTTAAAAGGCAGGAAGAAC 1205
||||| ||| ||||||||||||| ||| |||||||||| ||| ||||||||||||||||
Sbjct 1059 TAGCAGCAAAATTGAGGTTGCATATCAA-GAAGCTATTGTGCTAAAAAGGCAGGAAGAAC 1117
Query 1206 TTATCCGTGAAGAAGAGGAA-A--CTTCAAAACGGAGCAAAGTGCT-AAAAAAGGGTTTT 1261
|||| ||||| ||||||||| | | || ||||||||||||| ||| |||||||| ||||
Sbjct 1118 TTATTCGTGAGGAAGAGGAAGAAGCGTCGAAACGGAGCAAAGGGCTGAAAAAAGG-TTTT 1176
Query 1262 GGGAAATGTAGACTGAATTA 1281
||||||||||||||||||||
Sbjct 1177 GGGAAATGTAGACTGAATTA 1196
> Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3
Length=3532
Score = 976 bits (528), Expect = 0.0
Identities = 971/1173 (83%), Gaps = 78/1173 (7%)
Strand=Plus/Plus
Query 101 GATGTGGATGATGAGTATGGTCTTAAACCCTCTGAGTTATATGGAAAAAATACATGGAAG 160
|||| ||||||||| ||||| ||||||||||||||||||| ||||||| |||| ||||||
Sbjct 330 GATGAGGATGATGATTATGGCCTTAAACCCTCTGAGTTATTTGGAAAATATACTTGGAAG 389
Query 161 ATT-AAGAAATTTTCACAAATCAGCAAAAGGGAG-TTCGCTAGCAG-TGTTTTTGAAATT 217
||| | ||||||||| |||||| ||||||||| ||| |||| | | ||||||| |
Sbjct 390 ATTCCA-AAATTTTCAGAAATCAATAAAAGGGAGCATCG-TAGC-GATAATTTTGAAGCT 446
Query 218 GGAGGCTACAGTTGGCATATTTTAATGTATCCAGAAGGATGTGATGTTAGCAATCATCTC 277
|| ||||||| ||| |||||||||| |||||| |||||||||||||| |||||||||
Sbjct 447 GGCGGCTACAAATGGTATATTTTAATTTATCCACAAGGATGTGATGTTTTTAATCATCTC 506
Query 278 TCATTATTTCTCTGTGTTGCAAACCATGAT-GA--------A----C--TT-CT-TC--- 317
|| || |||||||||||||||||| ||||| | | | || || ||
Sbjct 507 TCCTTGTTTCTCTGTGTTGCAAACTATGATAAACTTCTTCCAGGTTCTTTTGCTATCTTG 566
Query 318 ----CAGGCTGGAGTCAGTTGGCTCAGTTTACTATATCTGTGATGCATAAAGATCCAAAG 373
||||||||||||| || ||||||||||||||||||||| || |||||||| ||||
Sbjct 567 GAGGCAGGCTGGAGTCATTTCGCTCAGTTTACTATATCTGTGTTGAATAAAGATATAAAG 626
Query 374 AAGTCTAAGTTTTCAGATACGCTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGG 433
|| | |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 627 AAAACGAAGTTTTCAGATACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGG 686
Query 434 AAAAAGTTTATGGAGTTACCGAAGTTACGGGATGGCTTCATAGATGATTCTGGCTGTCTT 493
|||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||
Sbjct 687 AAAAAGTTTATGGAGTTACCTAAGTTAAAGGACGGGTTCATAGATGATTCTGGCTGTCTT 746
Query 494 ACAATTGAAACTAAAGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTT-CT-T-CCTT 550
|||||||| || ||||||||||||||||||| ||||||||| ||||||| | | ||||
Sbjct 747 ACAATTGAGGCTCAAGTTCAGGTGATCAGAGAGAGGGTGGACAGACCTTTTCGCTGCCTT 806
Query 551 GATTATGGTTACAAGACAGAAATTGTTAGGGTGTATTTTCGAAATATAGAGCAAATTTTC 610
|||| | |||| | || |||| |||||||||||||||| | |||| | || |||| || |
Sbjct 807 GATTGTAGTTATAGGAGAGAACTTGTTAGGGTGTATTTGCCAAATGTGGATCAAAATTGC 866
Query 611 CTACGCTTTGTGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGATAGAGGACAAGGCCAA- 669
| || ||||| || ||||||||||||||||| | || |||||||||||||||||| ||
Sbjct 867 CGGCGTTTTGTTGAAGAGAGAAGAAGCAAGCTCGGGAGGTTGATAGAGGACAAGGC-AAG 925
Query 670 ATGGACAAGCTTCGGTGTTTTCTGGTTAGGAATGGACAAAAACTCTAGGCGT-GAGATGT 728
|||||| ||||||||||||||||||||||| |||||| |||||||||||||| | |||||
Sbjct 926 ATGGACTAGCTTCGGTGTTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCG-GATGT 984
Query 729 CTAGAGAGAAAATGGACGTAATCCTAAAAGGATTTGTAAAACACTTTTTCATGGAAAATG 788
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 985 CTAGAGAGAAAATGGACGTAATCCTAAAAGGAGTTGTAAAACACTTTTTCGTAGAAAAAG 1044
Query 789 TTGTTACATC-ACCTATAGCGATGGATTGCTTGTATAATGGGTTGAAGGATCTTGAAGTC 847
|||||||| || | | | |||||||| |||||||| ||||||||||| |||||||| |
Sbjct 1045 AAGTTACATCCACTT-TGGTGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTTGAAGGC 1103
Query 848 CAAACTAAGAACAAGAAAGCTAGCCCAAAACTGTTAGATGACAAGGAATTGCCAGCTCCG 907
||||||||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 1104 CAAACTAAGAACACGAAAGATAGGCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCA 1163
Query 908 TTTGTTAAA-GTGGACAGAGATATGTTCGTATTAGTTGATGATGATGTGTTGTTACTCCT 966
|||| || ||||| | |||||||||||||||||||||||||| || | |||||||||
Sbjct 1164 ATTGT-AAGCGTGGAAAAAGATATGTTCGTATTAGTTGATGATG-TGC-T-GTTACTCCT 1219
Query 967 AGAGAGGGCTGCACTCCTAGAGAGGGCTGCTCCAGAGCCATTGCCTCCGAAAGATGATAA 1026
|||||| ||||| || | || || ||||||||||| ||||| || ||
Sbjct 1220 AGAGAGAGCTGC--TC-T---------TG----AG--CCATTGCCTCCAAAAGAGGAGAA 1261
Query 1027 AGCTCTTCAAAACCGTATTAAGGA-GGACAAGGATGAAGAAGATATCAACAAGGAAGC-T 1084
|| || || ||||||| ||||| || ||| |||| |||||| ||||||||||||| |
Sbjct 1262 AGGTCCCCAGAACCGTACAAAGGATGG-CAATGATGGAGAAGAGGTCAACAAGGAAGCCT 1320
Query 1085 -------T-ATGAGATATGTTTAAATGAGTGGGGTAGACGAACTGTGGAGATATTTGTTC 1136
| |||||| | |||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1321 ACGAGCGTGATGAGAGACGTTTAACTGAGTTGGGTAGACGAACTGTGGAAATATTTGTTC 1380
Query 1137 TTGACCATATCTTTAGCA--AAATT-GAGGTTGCATA-CAAAGAAGCTATTGCGCTTAAA 1192
||| ||||||||| |||| ||| | ||||||||||| ||| |||||||| ||||| |||
Sbjct 1381 TTGCCCATATCTTCAGCAGTAAAATCGAGGTTGCATATCAA-GAAGCTATCGCGCTAAAA 1439
Query 1193 AGGCAGGAAGAACTTATCCGTGAAGAAGAGGAA 1225
||||||||||||||||| ||||| |||||||||
Sbjct 1440 AGGCAGGAAGAACTTATTCGTGAGGAAGAGGAA 1472
> Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2
Length=3428
Score = 771 bits (417), Expect = 0.0
Identities = 908/1135 (80%), Gaps = 74/1135 (7%)
Strand=Plus/Plus
Query 125 AAACCCTCTGAGTTATATGGAAAAAATACATGGAAGATTAAGAAATTTTCACAAATCAGC 184
||||| ||||| ||| ||| |||||||| |||| |||| ||||||||||| |||| | |
Sbjct 337 AAACCATCTGAACTATTTGGGAAAAATACTTGGACGATTGAGAAATTTTCAGAAATTAAC 396
Query 185 AAAAGGGAG-TTCGCTAGCAG-TGTTTTTGAAATTGGAGGCTACAGTTGGCATATTTTAA 242
||| ||||| | || | || | |||||||||| |||| ||||||| ||| |||| ||||
Sbjct 397 AAACGGGAGCTCCG-TGGC-GATGTTTTTGAAGTTGGGGGCTACAAATGGTATATATTAA 454
Query 243 TGTATCCAGAAGGATGTGATGTTAGCAATCATCTCTCATTATTTCTCTGTGTTGCAAACC 302
| |||||| |||| ||||||||| |||| |||||||| || ||||||||||||||| |||
Sbjct 455 TTTATCCACAAGGGTGTGATGTTTGCAACCATCTCTCTTTGTTTCTCTGTGTTGCACACC 514
Query 303 ATGATGAACTTCTTCCAGGCTGGAGTCAGTTGGCTCAGTTTACTATATCTGTGAT-GCAT 361
|||| |||||||||||||||||||||| || ||||||||||||||| ||||| | | ||
Sbjct 515 ATGAAAAACTTCTTCCAGGCTGGAGTCATTTTGCTCAGTTTACTATAGCTGTG-TCGAAT 573
Query 362 AAAGATCCAAAGAAGTCTAAGTTTTCAGATACGCTGCACCGGTTTTGGAAGAAAGAACAT 421
|||||||||||||| || ||| |||||||||| | |||||||||||||| |||||||||
Sbjct 574 AAAGATCCAAAGAAATCAAAGCATTCAGATACGTTACACCGGTTTTGGAAAAAAGAACAT 633
Query 422 GATTGGGGATGGAAAAAGTTTATGGAGTTACCGAAGTTACGGGATGGCTTCATAGATGAT 481
||||||||||||||||||||||| |||| ||| || ||| ||| || ||||||||||||
Sbjct 634 GATTGGGGATGGAAAAAGTTTATTGAGTCACCTAAATTAAAGGAAGGGTTCATAGATGAT 693
Query 482 TCTGGCTGTCTTACAATTGAAA-CTAAAGTTCAGGTGATCAGAGACAGGGTGGACCGACC 540
| || |||||||||||| || || |||| |||||||||||||| ||||||||||||||
Sbjct 694 TATGATTGTCTTACAATT-AAGGCTCAAGTCCAGGTGATCAGAGAGAGGGTGGACCGACC 752
Query 541 TTT-CT-T-CCTTGATTATG-GTTACAAGACAGAAA-TTGTTAGGGTGTATTTT-CGAAA 594
||| | | |||| ||||| || | | | || || ||||| |||||||||| | |||
Sbjct 753 TTTTCGCTGCCTTCATTATAAGT-ATAGGG-AGGAACTTGTTCGGGTGTATTTGAC-AAA 809
Query 595 TATAGAGCAAATTTTCCTA-CGCTTTGTGGAGGAGAGAAGAAGCAAGCTTGAGAAG-TTG 652
| |||||||||||| | | || |||||||| |||| |||||||||||||| | || |||
Sbjct 810 TGTAGAGCAAATTTGC-TGGCGGTTTGTGGAAGAGAAAAGAAGCAAGCTTG-GTAGGTTG 867
Query 653 ATAGAGGACAAGGCCAAATGGACAAGCTTCGGTGTTTTCTGGTTAGGAATGGACAAAAAC 712
|||||||||||||| ||||||| ||||||| ||| ||||||| | || ||||| ||||
Sbjct 868 ATAGAGGACAAGGCAAAATGGAAAAGCTTCTGTGCTTTCTGGATGGGGTTGGACCAAAAT 927
Query 713 TCTAGGCGT-GAGATGTCTAGAGAGAAAATGGACGTAATCCTAAAAGGATTTGTAAAACA 771
|| |||||| || ||||| ||||||||||||| || || |||||| | ||||||||||
Sbjct 928 TCAAGGCGTCGA-ATGTCCCGAGAGAAAATGGATGTGATTCTAAAAATAGTTGTAAAACA 986
Query 772 CTTTTTCATGGAAAATGTTGTTACATC-ACCTATAGCGATGGATTGCTTGTATAATGGGT 830
|| ||||| || || | |||||||| || | | | |||||||| |||||||| |||||
Sbjct 987 ATTCTTCATTGAGAAGGAAGTTACATCTACTT-TGGTGATGGATTCCTTGTATAGTGGGT 1045
Query 831 TGAAGGATCTTGAAGTCCAAACTAAGAACAAGAAAGCTAGCCCAAAACTGTTAGATGAC- 889
|||||| |||||||| ||||| ||||||||||||| |||| || | ||| | ||| ||
Sbjct 1046 TGAAGGCTCTTGAAGGCCAAATTAAGAACAAGAAAACTAGGCCGAGACTAATGGAT-ACT 1104
Query 890 -AAGGAATTGCCAGCTCCGTTTGTTAAAGTGGACAGAGATATGTTCGTATTAGTTGATGA 948
||| ||||||||||||| |||||| ||||||| ||||| ||| | ||||||||||||
Sbjct 1105 GAAG-AATTGCCAGCTCCAATTGTTAGTGTGGACAAAGATACGTTTGCATTAGTTGATGA 1163
Query 949 TGATGTGTTGTTACTCCTAGAGAGGGCTGCACTCCTAGAGAGGGCTGCTCCAGAGCCATT 1008
|| ||| | |||||| ||||||||||||| | | || ||||||||
Sbjct 1164 TG-TGT-TA-TTACTCTTAGAGAGGGCTGC--T----G-------TG-----GAGCCATT 1202
Query 1009 GCCTCCGAAAGATGATAAA-GCTCTTCAAAACCGTATTAAGGA-GGACAAGGATGAAGAA 1066
|||| | ||||| || ||| | || |||||||| | ||||| || || | || |||
Sbjct 1203 GCCTACAAAAGAGGAAAAAAG-TCCCCAAAACCGCACGAAGGATGGG-AATGCTGGAGAG 1260
Query 1067 GATAT-CAACA-AGGAAGC--TT-A---TGA-GATATG--TTTAAATGAGTGGGGTAGAC 1115
|| || || | || |||| || | ||| || | | ||||| ||||| ||||||||
Sbjct 1261 GA-ATTCAGTAGAG-AAGCCATTGAGCGTGATGAGAGGCGTTTAACTGAGTTGGGTAGAC 1318
Query 1116 GAACTGTGGAGATATTTGTTCTTG-ACCATATCTTTAGCAA-AA--TTGAGGTTGCATAC 1171
| |||||||||||||||||||||| || ||||||| ||||| || |||| |||||||||
Sbjct 1319 GGACTGTGGAGATATTTGTTCTTGCAC-ATATCTTCAGCAACAAAATTGAAGTTGCATAC 1377
Query 1172 AAAGAAGCTATTGCGCTTAAAA-GGCAGGAAGAACTTATCCGTGAAGAAGAGGAA 1225
||||||||||||| | ||| |||| ||||||||||| |||||||| ||||||
Sbjct 1378 CAAGAAGCTATTGCA-TGGAAACGGCAAGAAGAACTTATTCGTGAAGAGGAGGAA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5